porous_media: Python tools for porous media
porous_media provides Python utilities for porous media simulation results and meshes:
- Convert FEBio-exported VTK time series to XDMF/HDF5.
- Inspect and interpolate simulation data.
- Generate zonation patterns on annotated liver meshes.
- Render mesh data with PyVista and combine images and videos.
- Render FEBio input templates for parameter studies.
The documentation is available at matthiaskoenig.github.io/porous_media:
- Installation and quickstart
- User guides and API reference
- Contributing and development
- Release guide and release notes
Report bugs or request features through the issue tracker.
How to cite
If you use porous_media please cite the archived software on Zenodo:
König, M. (2026). porous_media: python utilities for porous media analysis and visualization (Version 0.4.0) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.23471452
@software{konig_porous_media,
author = {König, Matthias},
title = {porous_media: python utilities for porous media analysis and visualization},
year = {2026},
month = oct,
version = {0.4.0},
publisher = {Zenodo},
doi = {10.5281/zenodo.23471452},
url = {https://doi.org/10.5281/zenodo.23471452},
}
Citation metadata is available in CITATION.cff.
License
- Source Code: MIT
- Documentation: CC BY-SA 4.0
Funding
Matthias König is supported by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 "QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).
© 2023-2026 Matthias König, https://livermetabolism.com
1 maintainer
Metadata
1 maintainer
Release files for porous-media 0.5.0
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Total release size: 2.7 MB
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