porous_media: python utilities for SBML
porous_media is a collection of python utilities for working with porous media simulation results and meshes with source code available from https://github.com/matthiaskoenig/porous_media.
Features include among others
- Visualization of VTK results
- Image processing
- Mesh manipulation
- FEBio helpers
If you have any questions or issues please open an issue.
How to cite
License
- Source Code: MIT
- Documentation: CC BY-SA 4.0
Installation
Dependencies
porous_media depends on ffmpeg for creation of the videos
which can be installed via on linux via
sudo apt -y install ffmpeg
Make sure you can execute the following successfully from the command line:
ffmpeg
pip
porous_media is available from pypi and can be installed via
pip install porous_media
The develop version can be installed via
pip install git+https://github.com/matthiaskoenig/porous_media.git@develop
Development
Setup develop environment
uv sync --group dev
Setup pre-commit
pre-commit install
pre-commit run
Testing
Run all tests in parallel
tox run-parallel
Run single target
tox r -e py314
Funding
Matthias König is supported and by the German Research Foundation (DFG) within the Research Unit Programme FOR 5151 "QuaLiPerF (Quantifying Liver Perfusion-Function Relationship in Complex Resection - A Systems Medicine Approach)" by grant number 436883643 and by grant number 465194077 (Priority Programme SPP 2311, Subproject SimLivA).
© 2023-2026 Matthias König
1 maintainer
Release files for porous-media 0.3.0
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Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| porous_media-0.3.0.tar.gz | 11.6 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| porous_media-0.3.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 12.6 MB
Release files / porous_media-0.3.0.tar.gz
| Download URL | porous_media-0.3.0.tar.gz |
|---|---|
| Size | 11.6 MB |
| Tags | Source |
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| Size | 1.0 MB |
| Tags | Python 3 |
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