Skip to main content

Python wrapper for C++ LCMS library OpenMS

Project description

This package contains Python bindings for a large part of the OpenMS library for mass spectrometry based proteomics. It thus provides providing facile access to a feature-rich, open-source algorithm library for mass-spectrometry based proteomics analysis. These Python bindings allow raw access to the data-structures and algorithms implemented in OpenMS, specifically those for file access (mzXML, mzML, TraML, mzIdentML among others), basic signal processing (smoothing, filtering, de-isotoping and peak-picking) and complex data analysis (including label-free, SILAC, iTRAQ and SWATH analysis tools).

You can install pyopenms using:

pip install pyopenms

Please see https://github.com/OpenMS/OpenMS/wiki/pyOpenMS for more information.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distributions

No source distribution files available for this release.See tutorial on generating distribution archives.

Built Distributions

pyopenms-2.4.0-cp38-cp38-win_amd64.whl (26.0 MB view details)

Uploaded CPython 3.8 Windows x86-64

pyopenms-2.4.0-cp38-cp38-manylinux2014_x86_64.whl (36.0 MB view details)

Uploaded CPython 3.8

pyopenms-2.4.0-cp37-cp37m-win_amd64.whl (25.8 MB view details)

Uploaded CPython 3.7m Windows x86-64

pyopenms-2.4.0-cp37-cp37m-manylinux1_x86_64.whl (22.8 MB view details)

Uploaded CPython 3.7m

pyopenms-2.4.0-cp37-cp37m-macosx_10_7_x86_64.whl (27.2 MB view details)

Uploaded CPython 3.7m macOS 10.7+ x86-64

pyopenms-2.4.0-cp36-cp36m-win_amd64.whl (25.9 MB view details)

Uploaded CPython 3.6m Windows x86-64

pyopenms-2.4.0-cp36-cp36m-manylinux1_x86_64.whl (22.8 MB view details)

Uploaded CPython 3.6m

pyopenms-2.4.0-cp36-cp36m-macosx_10_7_x86_64.whl (27.3 MB view details)

Uploaded CPython 3.6m macOS 10.7+ x86-64

pyopenms-2.4.0-cp35-cp35m-win_amd64.whl (26.5 MB view details)

Uploaded CPython 3.5m Windows x86-64

pyopenms-2.4.0-cp35-cp35m-manylinux1_x86_64.whl (22.8 MB view details)

Uploaded CPython 3.5m

pyopenms-2.4.0-cp34-cp34m-manylinux1_x86_64.whl (22.8 MB view details)

Uploaded CPython 3.4m

pyopenms-2.4.0-cp27-cp27mu-manylinux1_x86_64.whl (22.8 MB view details)

Uploaded CPython 2.7mu

pyopenms-2.4.0-cp27-cp27m-manylinux1_x86_64.whl (22.8 MB view details)

Uploaded CPython 2.7m

pyopenms-2.4.0-cp27-cp27m-macosx_10_6_x86_64.whl (26.9 MB view details)

Uploaded CPython 2.7m macOS 10.6+ x86-64

File details

Details for the file pyopenms-2.4.0-cp38-cp38-win_amd64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp38-cp38-win_amd64.whl
  • Upload date:
  • Size: 26.0 MB
  • Tags: CPython 3.8, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp38-cp38-win_amd64.whl
Algorithm Hash digest
SHA256 37652d089097f3897846aa6d5953da25516fef0fd4ed4617c535e34b68e42a7a
MD5 2e3df11f261f3d5c88403186afd365ed
BLAKE2b-256 c49671ec553519053f3f41c3e6d15d03a625828ad149549b618b5a15dcfa0d0c

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp38-cp38-manylinux2014_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp38-cp38-manylinux2014_x86_64.whl
  • Upload date:
  • Size: 36.0 MB
  • Tags: CPython 3.8
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp38-cp38-manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 a1b15e296dff4e0c7045375e870c79fd2ed4a5abe33c47f0c92620ce72e3d22c
MD5 0081e2412355872c797590b934cca9bc
BLAKE2b-256 ebd95460e33d07b236b4f5ab78589f17f59730a04fdf2480707c35009051b897

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp37-cp37m-win_amd64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp37-cp37m-win_amd64.whl
  • Upload date:
  • Size: 25.8 MB
  • Tags: CPython 3.7m, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp37-cp37m-win_amd64.whl
Algorithm Hash digest
SHA256 611669bddb6653ec05fffbb141363fbe908baf6f5f254067562e8013667ca6b3
MD5 f5a19895ebb30509e8767aa567641162
BLAKE2b-256 a11ead138e541c16413f700c5143a3d4dabe194de219627e902fce5106c80da8

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp37-cp37m-manylinux1_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp37-cp37m-manylinux1_x86_64.whl
  • Upload date:
  • Size: 22.8 MB
  • Tags: CPython 3.7m
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp37-cp37m-manylinux1_x86_64.whl
Algorithm Hash digest
SHA256 b37bdb071708a86366a29305c5c485b96a8dc5ac0cf2766b86eb5c740e2aaf71
MD5 2976e8d9a31dcedeb9f4665f49edee90
BLAKE2b-256 b87519cea60fc9c6e6a8a7fa7b20153c12122695e8f11fa82410dcf23ab68484

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp37-cp37m-macosx_10_7_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp37-cp37m-macosx_10_7_x86_64.whl
  • Upload date:
  • Size: 27.2 MB
  • Tags: CPython 3.7m, macOS 10.7+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp37-cp37m-macosx_10_7_x86_64.whl
Algorithm Hash digest
SHA256 97cdb38529cc89e346d209fcaf947dc89ac97a972224dfdcd2dc02fd4a82abad
MD5 e57a589c8284fc065c1d77ad89d3e79e
BLAKE2b-256 69815542d0ddece2a4820e881e9d861ca67c74669486a1598c559bf21e5cc7b3

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp36-cp36m-win_amd64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp36-cp36m-win_amd64.whl
  • Upload date:
  • Size: 25.9 MB
  • Tags: CPython 3.6m, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp36-cp36m-win_amd64.whl
Algorithm Hash digest
SHA256 c962f86f3e29785d770317554a3eebeb7c612ae0eab67be4ec783336b6d95766
MD5 0e85423b7fa936cb5772a39577708465
BLAKE2b-256 f4ad7712ebe6906ff1ebf69bbaa71ff18f6b492311dc12f4079bfb883ade11c3

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp36-cp36m-manylinux1_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp36-cp36m-manylinux1_x86_64.whl
  • Upload date:
  • Size: 22.8 MB
  • Tags: CPython 3.6m
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp36-cp36m-manylinux1_x86_64.whl
Algorithm Hash digest
SHA256 f96e206d58a61ea68419160167c1702ddc9d7beffa6b7a725ea8e3435d007f0e
MD5 954ff2a1a94b81bfb6c259b40f903320
BLAKE2b-256 3d580c0708c5f795807e062cc477700bfde4eca1d0219c8b56eaa5dff8118036

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp36-cp36m-macosx_10_7_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp36-cp36m-macosx_10_7_x86_64.whl
  • Upload date:
  • Size: 27.3 MB
  • Tags: CPython 3.6m, macOS 10.7+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp36-cp36m-macosx_10_7_x86_64.whl
Algorithm Hash digest
SHA256 913d39a5c0aaf73d34b53e01228543c2cde60c6cb2164edcd65e61751afca773
MD5 c73737f6e4864f28ef7feb8d3cec3d57
BLAKE2b-256 fe16d78301b3fa17d8b7d25a38d7ee6a5ade90e4b234dabe25329f879d9ce349

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp35-cp35m-win_amd64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp35-cp35m-win_amd64.whl
  • Upload date:
  • Size: 26.5 MB
  • Tags: CPython 3.5m, Windows x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp35-cp35m-win_amd64.whl
Algorithm Hash digest
SHA256 d9d8a0c629551d6c0326ce5a4b7354e7bf9c44f63e765fc18b2db5191d702e4f
MD5 78606c6f75039e3b8682ba9ebf2d6536
BLAKE2b-256 c5129eab59796710c98f06acd79f046dea19941400ed6ccddfccaf53bccec8be

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp35-cp35m-manylinux1_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp35-cp35m-manylinux1_x86_64.whl
  • Upload date:
  • Size: 22.8 MB
  • Tags: CPython 3.5m
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp35-cp35m-manylinux1_x86_64.whl
Algorithm Hash digest
SHA256 f75622c9f92c056faa685311c0e754e4ace6b7745dead9c756de25d8ccfff106
MD5 8994b443b8b1c3f105c67d3c1a89109a
BLAKE2b-256 bf60a102a02bd2e7804073d620801e9ab5a801cfde87596d952300ebfdba3390

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp34-cp34m-manylinux1_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp34-cp34m-manylinux1_x86_64.whl
  • Upload date:
  • Size: 22.8 MB
  • Tags: CPython 3.4m
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp34-cp34m-manylinux1_x86_64.whl
Algorithm Hash digest
SHA256 9348b132b65b1200a2259685a161649e7190dce7ea084f93ea820d46f89bba8f
MD5 e7e78aa2af7c8d17cc821f66788a8349
BLAKE2b-256 cd8effa9e5030654bdd9101be1c85a4b77379827f08856e2512e549096538292

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp27-cp27mu-manylinux1_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp27-cp27mu-manylinux1_x86_64.whl
  • Upload date:
  • Size: 22.8 MB
  • Tags: CPython 2.7mu
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp27-cp27mu-manylinux1_x86_64.whl
Algorithm Hash digest
SHA256 8b76877c1c4a1d90034996f6500bbc5ece3da6388f206b73b3e11f496df66f0e
MD5 3fa3c8a926a9e816ab47fc6aaef45a66
BLAKE2b-256 6bead3bfc3dd92daf821f3ed6069f3ec3ef53158d5ba2ef28cd6ea050978f59b

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp27-cp27m-manylinux1_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp27-cp27m-manylinux1_x86_64.whl
  • Upload date:
  • Size: 22.8 MB
  • Tags: CPython 2.7m
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp27-cp27m-manylinux1_x86_64.whl
Algorithm Hash digest
SHA256 6b3c2907f8eb6be4436f41b8b2bc5e7e6bb02bac3a689e0b2cb1032b747cfcf1
MD5 d36fce764f114a1849a7e7d56769873a
BLAKE2b-256 286a64a625378a9aa90988ae05bfb86b6ee8a74f0dfc14f5e3f57084e2b14ee4

See more details on using hashes here.

File details

Details for the file pyopenms-2.4.0-cp27-cp27m-macosx_10_6_x86_64.whl.

File metadata

  • Download URL: pyopenms-2.4.0-cp27-cp27m-macosx_10_6_x86_64.whl
  • Upload date:
  • Size: 26.9 MB
  • Tags: CPython 2.7m, macOS 10.6+ x86-64
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/1.12.1 pkginfo/1.4.2 requests/2.18.4 setuptools/40.0.0 requests-toolbelt/0.8.0 tqdm/4.23.3 CPython/2.7.12

File hashes

Hashes for pyopenms-2.4.0-cp27-cp27m-macosx_10_6_x86_64.whl
Algorithm Hash digest
SHA256 814889a889a16fee614e9158e84d7613a32a85de91a5c1aa614b5fa6e5a68353
MD5 9422901ff83467ebd509adeb09517010
BLAKE2b-256 2bc297971dd613b9785b216082c35ca25487f78231dab7f8303b5fc49b5d5024

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page