Structure Ensemble Inference by Sequencing, Mutation Identification, and Clustering of RNA (SEISMIC-RNA)

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  • License: GPL-3.0-only
  • Author: Matty Allan, Scott Grote, Justin Aruda, Yves Martin, Alberic de Lajarte
  • Requires: Python >=3.11
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SEISMIC-RNA

Structure Ensemble Inference by Sequencing, Mutation Identification, and Clustering of RNA

Logo of SEISMIC-RNA

About

SEISMIC-RNA analyzes data from RNA mutational profiling experiments, such as DMS-MaPseq and SHAPE-MaP. This software introduces an optimized implementation of the algorithm DREEM for detecting and quantifying RNA structure ensembles.

Documentation

Documentation for installing and using SEISMIC-RNA is available on GitHub Pages.

Issues

The issue page of the GitHub repository is the official location for reporting bugs and other issues. Before opening a new issue, please check if a similar issue already exists.

Contributors

SEISMIC-RNA has been developed by the following individuals in the lab of Silvi Rouskin at Harvard Medical School:

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  • License: GPL-3.0-only
  • Author: Matty Allan, Scott Grote, Justin Aruda, Yves Martin, Alberic de Lajarte
  • Requires: Python >=3.11
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0.25.3

This version

0.25.2

0.25.0

0.24.4

0.24.3

0.24.2

0.24.1

0.24.0

0.23.1

0.23.0

0.22.3

0.22.2

0.22.1

0.22.0

0.21.1

0.21.0

0.20.1

0.20.0

0.19.2

0.19.1

0.19.0

0.18.2

0.18.1

0.18.0

0.17.6

0.17.5

0.17.4

0.17.3

0.17.2

0.17.1

0.17.0

0.16.5

0.16.4

0.16.3

0.16.2

0.16.1

0.16.0

0.15.6

0.15.5

0.15.4

0.15.3

0.15.2

0.15.1

0.15.0

0.14.1

0.14.0

0.13.1

0.13.0

0.12.2

0.12.1

0.12.0

0.11.5

0.11.4

0.11.3

0.11.2

0.11.1

0.11.0

0.10.0

0.9.8

0.9.7

0.9.6

0.9.5

0.9.4

0.9.3

0.9.2

0.9.1

0.9.0

0.8.3

0.8.2

0.8.1

0.8.0

0.7.6

0.7.5

0.7.4

0.7.3

0.7.2

0.7.1

0.7.0

0.6.2

0.6.1

0.6.0

0.5.0

0.4.1

0.4.0

0.3.0

0.2.0

0.1.3

0.1.2

0.1.1

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