SEISMIC-RNA

Structure Ensemble Inference by Sequencing, Mutation Identification, and Clustering of RNA

Logo of SEISMIC-RNA

About

SEISMIC-RNA analyzes data from RNA mutational profiling experiments, such as DMS-MaPseq and SHAPE-MaP. This software introduces an optimized implementation of the algorithm DREEM for detecting and quantifying RNA structure ensembles.

Documentation

Documentation for installing and using SEISMIC-RNA is available on GitHub Pages.

Issues

The issue page of the GitHub repository is the official location for reporting bugs and other issues. Before opening a new issue, please check if a similar issue already exists.

Contributors

SEISMIC-RNA has been developed by the following individuals in the lab of Silvi Rouskin at Harvard Medical School:

Project links

Data verified by PyPI on Aug 27, 2026
Data provided by the project maintainers, verified at the time the release was uploaded to PyPI.

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

2 maintainers

PyPI data
Data sourced directly from PyPI's database.
Avatar for justinaruda from gravatar.com justinaruda Avatar for mfallan from gravatar.com mfallan

Credits

Author: Matty Allan, Scott Grote, Justin Aruda, Yves Martin, Alberic de Lajarte

GitHub Statistics

Data verified by PyPI on Aug 27, 2026
The GitHub source repository was provided by the project maintainers and verified by PyPI at the time of upload. Stars, forks, and open issues/PRs are derived from that repository and have not been independently verified.

License

GPL-3.0-only

Requires

Python <3.14, >=3.13

Classifiers

Report project as malware

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

seismic_rna-0.26.0.tar.gz (51.1 MB view details)

Uploaded Source

Built Distributions

If you're not sure about the file name format, learn more about wheel file names.

seismic_rna-0.26.0-cp313-cp313-musllinux_1_2_x86_64.whl (860.0 kB view details)

Uploaded CPython 3.13musllinux: musl 1.2+ x86-64

seismic_rna-0.26.0-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (859.7 kB view details)

Uploaded CPython 3.13manylinux: glibc 2.17+ x86-64manylinux: glibc 2.28+ x86-64

seismic_rna-0.26.0-cp313-cp313-macosx_11_0_arm64.whl (857.8 kB view details)

Uploaded CPython 3.13macOS 11.0+ ARM64

File details

Details for the file seismic_rna-0.26.0.tar.gz.

File metadata

  • Download URL: seismic_rna-0.26.0.tar.gz
  • Upload date:
  • Size: 51.1 MB
  • Tags: Source
  • Uploaded using Trusted Publishing? Yes
  • Uploaded via: twine/7.0.0 CPython/3.13.14

File hashes

Hashes for seismic_rna-0.26.0.tar.gz
Algorithm Hash digest
SHA256 76aaf32a3c7d41c543008b6a246179c46311898e267dd5f81676d3df277e2dd5
MD5 549991853c3e125fdc476519c9be17c1
BLAKE2b-256 ee76d2e2c597090aa6ae5d66f73f04fa7b803dc2df68edb891d0cc6016810983

See more details on using hashes here.

Provenance

The following attestation bundles were made for seismic_rna-0.26.0.tar.gz:

Publisher: build-publish.yml on rouskinlab/seismic-rna

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file seismic_rna-0.26.0-cp313-cp313-musllinux_1_2_x86_64.whl.

File metadata

File hashes

Hashes for seismic_rna-0.26.0-cp313-cp313-musllinux_1_2_x86_64.whl
Algorithm Hash digest
SHA256 e5058120adf6370c63870dd2ac9170dbb61c6ccddbf19594498f356c851d329a
MD5 97bd5e85569f953f54ff300b4219a319
BLAKE2b-256 8d56dffefa988ac696e078928239b1a4efe4bdcb3dc7de070bfede544a0526b8

See more details on using hashes here.

Provenance

The following attestation bundles were made for seismic_rna-0.26.0-cp313-cp313-musllinux_1_2_x86_64.whl:

Publisher: build-publish.yml on rouskinlab/seismic-rna

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file seismic_rna-0.26.0-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.

File metadata

File hashes

Hashes for seismic_rna-0.26.0-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl
Algorithm Hash digest
SHA256 7191d53e086ae0d5de5292df7fa78ac9bc24b3d69330b98270d2fcbd63b6f541
MD5 d9b4f1b78279dbb500985f928f5022fb
BLAKE2b-256 210e8e5f59ae87201a07e57dc1b3021db2fe04f607f779f2179f4139ce21eb58

See more details on using hashes here.

Provenance

The following attestation bundles were made for seismic_rna-0.26.0-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl:

Publisher: build-publish.yml on rouskinlab/seismic-rna

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

File details

Details for the file seismic_rna-0.26.0-cp313-cp313-macosx_11_0_arm64.whl.

File metadata

File hashes

Hashes for seismic_rna-0.26.0-cp313-cp313-macosx_11_0_arm64.whl
Algorithm Hash digest
SHA256 10ad81155b672eb52ccaa376e9e724b64e4bef3feed25749d1417bb545a41b40
MD5 9015f72c0ec6c7f0909dfd9159cc27fc
BLAKE2b-256 e257b96d0d2451c52cfd56359004a71a02934c1f667e7d9271a93ec625518cc8

See more details on using hashes here.

Provenance

The following attestation bundles were made for seismic_rna-0.26.0-cp313-cp313-macosx_11_0_arm64.whl:

Publisher: build-publish.yml on rouskinlab/seismic-rna

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

Release history Release notifications | RSS feed

This release

0.26.0 This release

4 files

0.25.3

16 files

0.25.2

16 files

0.25.0

16 files

0.24.4

16 files

0.24.3

16 files

0.24.2

19 files

0.24.1

19 files

0.24.0

16 files

0.23.1

24 files

0.23.0

24 files

0.22.3

24 files

0.22.2

18 files

0.22.1

2 files

0.22.0

2 files

0.21.1

2 files

0.21.0

2 files

0.20.1

2 files

0.20.0

2 files

0.19.2

2 files

0.19.1

2 files

0.19.0

2 files

0.18.2

2 files

0.18.1

2 files

0.18.0

2 files

0.17.6

2 files

0.17.5

2 files

0.17.4

2 files

0.17.3

2 files

0.17.2

2 files

0.17.1

2 files

0.17.0

2 files

0.16.5

2 files

0.16.4

2 files

0.16.3

2 files

0.16.2

3 files

0.16.1

2 files

0.16.0

2 files

0.15.6

2 files

0.15.5

2 files

0.15.4

2 files

0.15.3

2 files

0.15.2

2 files

0.15.1

2 files

0.15.0

2 files

0.14.1

2 files

0.14.0

2 files

0.13.1

2 files

0.13.0

2 files

0.12.2

2 files

0.12.1

2 files

0.12.0

2 files

0.11.5

2 files

0.11.4

2 files

0.11.3

2 files

0.11.2

2 files

0.11.1

2 files

0.11.0

2 files

0.10.0

2 files

0.9.8

2 files

0.9.7

2 files

0.9.6

2 files

0.9.5

2 files

0.9.4

2 files

0.9.3

2 files

0.9.2

2 files

0.9.1

2 files

0.9.0

2 files

0.8.3

2 files

0.8.2

2 files

0.8.1

2 files

0.8.0

2 files

0.7.6

2 files

0.7.5

2 files

0.7.4

2 files

0.7.3

2 files

0.7.2

2 files

0.7.1

2 files

0.7.0

2 files

0.6.2

2 files

0.6.1

2 files

0.6.0

2 files

0.5.0

2 files

0.4.1

2 files

0.4.0

2 files

0.3.0

2 files

0.2.0

2 files

0.1.3

2 files

0.1.2

2 files

0.1.1

2 files

0.1.0

2 files

Anthropic, PBC Visionary sponsor Bloomberg Visionary sponsor Hudson River Trading Visionary sponsor Meta Visionary sponsor NVIDIA Visionary sponsor Microsoft Sustainability sponsor Depot Continuous Integration AWS Cloud computing and Security Sponsor Datadog Monitoring Fastly CDN Google Download Analytics Sentry Error logging StatusPage Status page