https://github.com/timoast/sinto/workflows/pytest/badge.svg https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat https://badge.fury.io/py/sinto.svg https://pepy.tech/badge/sinto

Sinto is a toolkit for processing aligned single-cell data. Sinto includes functions to:

  • Subset reads from a BAM file by cell barcode

  • Create a scATAC-seq fragments file from a BAM file

  • Add read tags to a BAM file according to cell barcode information

  • Add read groups based on read tags

  • Copy or move read tags to another read tag

  • Copy cell barcodes to/from read names or read tags

  • Add cell barcodes to FASTQ read names

Read the documentation at https://timoast.github.io/sinto

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for TimStuart from gravatar.com TimStuart

Credits

Author: Tim Stuart

License

MIT License (MIT)

Requires

Python >=3.8

Classifiers

Report project as malware

Metadata

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for TimStuart from gravatar.com TimStuart

Credits

Author: Tim Stuart

License

MIT License (MIT)

Requires

Python >=3.8

Classifiers

Report project as malware

Release files for sinto 0.10.1

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for sinto 0.10.1
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sinto-0.10.1.tar.gz 20.1 kB Details

Built distribution (wheel)

Table of built distributions (wheels) for sinto 0.10.1
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sinto-0.10.1-py3-none-any.whl 23.1 kB Python 3 none any Details

Total release size: 43.2 kB

Release files / sinto-0.10.1.tar.gz

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Size 23.1 kB
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