Tools for single-cell data processing
Project description
Sinto is a toolkit for processing aligned single-cell data. Sinto includes functions to:
Subset reads from a BAM file by cell barcode
Create a scATAC-seq fragments file from a BAM file
Add read tags to a BAM file according to cell barcode information
Add read groups based on read tags
Copy or move read tags to another read tag
Copy cell barcodes to/from read names or read tags
Add cell barcodes to FASTQ read names
Read the documentation at https://timoast.github.io/sinto
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
sinto-0.10.1.tar.gz
(20.1 kB
view details)
Built Distribution
sinto-0.10.1-py3-none-any.whl
(23.1 kB
view details)
File details
Details for the file sinto-0.10.1.tar.gz.
File metadata
- Download URL: sinto-0.10.1.tar.gz
- Upload date:
- Size: 20.1 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.1.0 CPython/3.10.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
ac54280a62db55d139635cf96a2a36e40857282f660a67c1ce5d4a31115beae7
|
|
| MD5 |
09ee74a43b932232791ef0e7192e738f
|
|
| BLAKE2b-256 |
800183d5d68f5e3e69fdde7f7caafcf79b994e29aa44d642ff7bc6ba2f8bd125
|
File details
Details for the file sinto-0.10.1-py3-none-any.whl.
File metadata
- Download URL: sinto-0.10.1-py3-none-any.whl
- Upload date:
- Size: 23.1 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/5.1.0 CPython/3.10.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
983cb089036d8adca87775befd2acd38e5e1ca11614044ee8456336b20c9ac4d
|
|
| MD5 |
71b06633515fce03aa1d5ae031743a24
|
|
| BLAKE2b-256 |
582543d6f9ac9d316a5d03056fd17d803d701e309ce4cd3aa9c99c63d5c1de84
|
