Tools for single-cell data processing
Project description
Sinto is a toolkit for processing aligned single-cell data. Sinto includes functions to:
Subset reads from a BAM file by cell barcode
Create a scATAC-seq fragments file from a BAM file
Add read tags to a BAM file according to cell barcode information
Add read groups based on read tags
Copy or move read tags to another read tag
Copy cell barcodes to/from read names or read tags
Add cell barcodes to FASTQ read names
Read the documentation at https://timoast.github.io/sinto
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