Skip to main content

Convert Snapgene *.dna files dict/json/biopython.

Project description

Travis CI build status https://coveralls.io/repos/github/Edinburgh-Genome-Foundry/SnapGeneReader/badge.svg?branch=master

SnapGene Reader is a Python library to parse Snapgene *.dna files into dictionaries or Biopython SeqRecords:

from snapgene_reader import snapgene_file_to_dict, snapgene_file_to_seqrecord

file_path = './snap_gene_file.dna'
dictionary = snapgene_file_to_dict(filepath)
seqrecord = snapgene_file_to_seqrecord(filepath)

Installation

Install with PIP:

pip install snapgene_reader

Test with Pytest:

pytest --cov=snapgene_reader tests/

Licence = MIT

SnapGene Reader is an open-source software originally written by Isaac Luo at the Cai Lab. This fork is released on Github under the MIT licence. Everyone is welcome to contribute!

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

snapgene_reader-0.1.20.tar.gz (6.2 kB view hashes)

Uploaded source

Built Distribution

snapgene_reader-0.1.20-py3-none-any.whl (6.9 kB view hashes)

Uploaded py3

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Huawei Huawei PSF Sponsor Microsoft Microsoft PSF Sponsor NVIDIA NVIDIA PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page