Skip to main content

Convert Snapgene *.dna files dict/json/biopython.

Project description

Travis CI build status

SnapGene Reader is a Python library to parse Snapgene *.dna files into dictionnaries or Biopython SeqRecords:

from snapgene_reader import snapgene_file_to_dict, snapgene_file_to_seqrecord

file_path = './snap_gene_file.dna'
dictionnary = snapgene_file_to_dict(filepath)
seqrecord = snapgene_file_to_seqrecord(filepath)

Installation

Install with PIP:

pip install snapgene_reader

Test with Pytest:

python -m pytest
(or simply "pytest")

Licence = MIT

SnapGene Reader is an open-source software originally written by Isaac Luo at the Cai Lab. This fork is released on Github under the MIT licence (¢ Isaac Luo and Cai Lab) and maintained by the Edinburgh Genome Foundry. Everyone is welcome to contribute.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

snapgene_reader-0.1.14.tar.gz (5.4 kB view details)

Uploaded Source

File details

Details for the file snapgene_reader-0.1.14.tar.gz.

File metadata

File hashes

Hashes for snapgene_reader-0.1.14.tar.gz
Algorithm Hash digest
SHA256 219877787e498768382405a4b0ac74a81921cf9d62fd465405703e1fbbe2d8c4
MD5 43060e7ed221761723be5a46f0956b6e
BLAKE2b-256 92710c21786fc41abf8dd0f14d6363f0b6ec10f3506cd6396f18a1322e78ec16

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page