stringdb
Python functions to access the STRINGdb API, a source of protein-protein association networks. Documentation for the api can be found here: https://string-db.org/help/api/
Free software: MIT license
Documentation: https://stringdb.readthedocs.io.
Tutorial
To install:
$ pip install stringdb
Basic Usage
import stringdb genes = ['TP53', 'BRCA1', 'FANCD1', 'FANCL'] string_ids = stringdb.get_string_ids(genes) enrichment_df = stringdb.get_enrichment(string_ids.queryItem)
There are 5 functions for querying a list of stringIds, which follow the pattern get_*
where * can be ‘enrichment’, ‘interaction_partners’, ‘ppi_enrichment’, ‘network’, and ‘functional_annotation’
TODO
Credits
This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.
History
0.1.5 (2020-08-18)
Allow for background identifiers in enrichment analysis
0.1.4 - 0.1.2 (2020-06-24)
Setup travis pypi release
0.1.1 (2020-06-24)
Added requests to requirements
0.1.0 (2020-06-22)
First release on PyPI.
5 maintainers
Metadata
5 maintainers
Release files for stringdb 0.1.5
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| stringdb-0.1.5.tar.gz | 11.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| stringdb-0.1.5-py2.py3-none-any.whl | Python 2, Python 3 | none | any | Details |
Total release size: 17.0 kB
Release files / stringdb-0.1.5.tar.gz
| Download URL | stringdb-0.1.5.tar.gz |
|---|---|
| Size | 11.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
2f83d2be40494901789f9193f0ab90589110d52d22768e83563b2136a6bab940
|
|
BLAKE2b-256 checksum How to use checksums |
ad50f75649c25e38f61bcb1c8e5d94b3c94571b973e9583cb4c72bc5b15d4657
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/49.6.0 requests-toolbelt/0.9.1 tqdm/4.48.2 CPython/3.8.0
|
Release files / stringdb-0.1.5-py2.py3-none-any.whl
| Download URL | stringdb-0.1.5-py2.py3-none-any.whl |
|---|---|
| Size | 5.2 kB |
| Tags | Python 2 Python 3 |
|
SHA-256 checksum How to use checksums |
4c5f696b91b1bacda4ebcce32b7bc1a67d8d6febbcc5af6b8df8b333a51b4439
|
|
BLAKE2b-256 checksum How to use checksums |
8e410f33f2bfe19b05fb3839a4fbd9aaa0ed013b74dbfe379301dd3c7edd8d8c
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.2.0 pkginfo/1.5.0.1 requests/2.24.0 setuptools/49.6.0 requests-toolbelt/0.9.1 tqdm/4.48.2 CPython/3.8.0
|
