tstrait
tstrait is a quantitative trait simulator of tskit tree sequences. It supports simulation of quantitative traits, sampling genetic effect sizes from various distributions, modelling pleiotropic phenotypes and environmental noise, and computing per-individual, per-node, and per-edge genetic values given the effect sizes of causal mutations.
Documentation: https://tskit.dev/tstrait/docs/stable/ (latest: https://tskit.dev/tstrait/docs/latest/) Learn more about tree sequences: https://tskit.dev/learn/
Installation
python -m pip install tstrait
# or
conda install -c conda-forge tstrait
Quickstart
See the documentation quickstart and examples: https://tskit.dev/tstrait/docs/stable/
2 maintainers
Release files for tstrait 0.2.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| tstrait-0.2.0.tar.gz | 330.9 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| tstrait-0.2.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 357.4 kB
Release files / tstrait-0.2.0.tar.gz
| Download URL | tstrait-0.2.0.tar.gz |
|---|---|
| Size | 330.9 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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twine/6.1.0 CPython/3.13.13
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Transparency logRelease files / tstrait-0.2.0-py3-none-any.whl
| Download URL | tstrait-0.2.0-py3-none-any.whl |
|---|---|
| Size | 26.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/6.1.0 CPython/3.13.13
|
Provenance
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PyPI Publish Attestation
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