limix
Genomic analyses require flexible models that can be adapted to the needs of the user.
Limix is a flexible and efficient linear mixed model library with interfaces to Python. It includes methods for
- Single-variant association and interaction testing
- Variance decompostion analysis with linear mixed models
- Association and interaction set tests
- Different utils for statistical analysis, basic i/o, and plotting.
We have an extensive documentation of the library. If you need further help or want to discuss anything related to limix, please, join our forum 💬 and have a chat with us 😃. In case you have found a bug, please, report it creating an issue.
Install
NOTE: We will be maintaining limix 2.0.x for a while, in case you find some missing feature in limix 3.0.x. If that is the case, please, type
pip install "limix <3,>=2"in your terminal.
Installation is easy and works on macOS, Linux, and Windows:
pip install limix
If you already have Limix but want to upgrade it to the latest version:
pip install limix --upgrade
Interactive tutorials
- eQTL (requires limix 2.0.x)
- Struct-LMM (requires limix 2.0.x)
Running tests
After installation, you can test it
python -c "import limix; limix.test()"
as long as you have pytest.
Authors
License
This project is licensed under the Apache License License.
2 maintainers
Metadata
2 maintainers
Release files for limix 3.0.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| limix-3.0.4.tar.gz | 82.0 kB | Without provenance | Details for limix-3.0.4.tar.gz |
Release files / limix-3.0.4.tar.gz
| Download URL | limix-3.0.4.tar.gz |
|---|---|
| Size | 82.0 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
9e32e82c18d66676c1d3c47c045b535f2064dba5bebafcd4036d1e01ef63d98a
|
|
BLAKE2b-256 checksum How to use checksums |
d668f878f7879c772016ebea618255a781408d057aec0f06673f7a8e5909344c
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/2.0.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.2.0 requests-toolbelt/0.9.1 tqdm/4.36.1 CPython/3.6.7
|
Security for limix 3.0.4
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
