Next Generation Sequencing fragment manipulation

This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install NGSfragments

from NGSfragments import fragments
import numpy as np

# Create data
frags = fragments("test_bam.bam", verbose=True)

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution for ngsfragments 2.6.2
File	Size	Uploaded
ngsfragments-2.6.2.tar.gz	4.8 MB	Sep 8, 2026	Details

Table of built distributions (wheels) for ngsfragments 2.6.2
File	Interpreter	ABI	Platform	Reset
ngsfragments-2.6.2-cp314-cp314-macosx_12_0_arm64.whl 2.6 MB Sep 8, 2026	CPython 3.14	CPython 3.14	macOS 12.0+ ARM64	Details

Total release size: 7.4 MB

Download URL	ngsfragments-2.6.2.tar.gz
Size	4.8 MB
Tags	Source
SHA-256 checksum How to use checksums	`4ebcd8d19cac2147f9b58267d0c3f1b3f14ef61c6a03a21212cb699233bbbdca`
BLAKE2b-256 checksum How to use checksums	`5a8ffa5ef9b825b5aead4ee16f7432a78d6029856905ef5ad37e470dfa33ef3e`
Upload date	Sep 8, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/7.0.0 CPython/3.14.7`

Download URL	ngsfragments-2.6.2-cp314-cp314-macosx_12_0_arm64.whl
Size	2.6 MB
Tags	CPython 3.14 macOS 12.0+ ARM64
SHA-256 checksum How to use checksums	`f7cf944d05a984a457bfb370f5b709bba3ad411e736ce53d7577483711d7cca9`
BLAKE2b-256 checksum How to use checksums	`ee5668e86898a86820042db4f6a9a44c2bed17fefafff22ca54f9cfcdea2298b`
Upload date	Sep 8, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/7.0.0 CPython/3.14.7`