Next Generation Sequencing fragment manipulation

This is a Python package for easy and efficient manipulation of Next Generation Sequencing reads.

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install NGSfragments

from NGSfragments import fragments
import numpy as np

# Create data
frags = fragments("test_bam.bam", verbose=True)

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution for ngsfragments 2.6.1
File	Size	Uploaded
ngsfragments-2.6.1.tar.gz	4.8 MB	Sep 2, 2026	Details

Table of built distributions (wheels) for ngsfragments 2.6.1
File	Interpreter	ABI	Platform	Reset
ngsfragments-2.6.1-cp314-cp314-macosx_12_0_arm64.whl 2.6 MB Sep 2, 2026	CPython 3.14	CPython 3.14	macOS 12.0+ ARM64	Details

Total release size: 7.4 MB

Download URL	ngsfragments-2.6.1.tar.gz
Size	4.8 MB
Tags	Source
SHA-256 checksum How to use checksums	`a6a62f9b7384297c1d941974d6f3ee97e24e594fcf18b0d7a12060ec3483d649`
BLAKE2b-256 checksum How to use checksums	`2f088033a19ef3b9b8684231d3f990c5674668b76b516c0211ea47be2b24b39d`
Upload date	Sep 2, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/7.0.0 CPython/3.14.7`

Download URL	ngsfragments-2.6.1-cp314-cp314-macosx_12_0_arm64.whl
Size	2.6 MB
Tags	CPython 3.14 macOS 12.0+ ARM64
SHA-256 checksum How to use checksums	`6d76b65790d03908167a4171274238db2f28abae007bc1eb60a0e7fa817262df`
BLAKE2b-256 checksum How to use checksums	`35cff42844b4a109232807deffef362ff0ffe7c3eede87a36f1d495e25041050`
Upload date	Sep 2, 2026
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`twine/7.0.0 CPython/3.14.7`