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Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool

Project description

Documentation Status Conda Version PyPI version Maintainability

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conda noarch
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BAMnostic

a pure Python, OS-agnositic Binary Alignment Map (BAM) file parser and random access tool.

Note:

Documentation can be found at here or by going to this address: http://bamnostic.readthedocs.io. Documentation was made available through Read the Docs.


Installation

There are 4 methods of installation available (choose one):

Through the conda package manager (Anaconda Cloud)

# first, add the conda-forge channel to your conda build
conda config --add channels conda-forge

# now bamnostic is available for install
conda install bamnostic

Through the Python Package Index (PyPI)

pip install bamnostic

# or, if you don't have superuser access
pip install --user bamnostic

Through pip+Github

# again, use --user if you don't have superuser access
pip install -e git+https://github.com/betteridiot/bamnostic.git#egg=bamnostic

# or, if you don't have superuser access
pip install --user -e git+https://github.com/betteridiot/bamnostic.git#bamnostic#egg=bamnostic

Traditiona

Download files

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Filename, size & hash SHA256 hash help File type Python version Upload date
bamnostic-1.0.7.tar.gz (184.5 kB) Copy SHA256 hash SHA256 Source None

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