Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool
Project description
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Linux |
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conda |
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PyPI |
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conda |
BAMnostic
a pure Python, OS-agnositic Binary Alignment Map (BAM) file parser and random access tool.
Note:
Documentation can be found at here or by going to this address: http://bamnostic.readthedocs.io. Documentation was made available through Read the Docs.
Installation
There are 4 methods of installation available (choose one):
Through the conda package manager (Anaconda Cloud)
# first, add the conda-forge channel to your conda build
conda config --add channels conda-forge
# now bamnostic is available for install
conda install bamnostic
Through the Python Package Index (PyPI)
pip install bamnostic
# or, if you don't have superuser access
pip install --user bamnostic
Through pip+Github
# again, use --user if you don't have superuser access
pip install -e git+https://github.com/betteridiot/bamnostic.git#egg=bamnostic
# or, if you don't have superuser access
pip install --user -e git+https://github.com/betteridiot/bamnostic.git#bamnostic#egg=bamnostic
Traditiona
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bamnostic-1.1.2.tar.gz
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