bioimageflow-tracking-tools
Tools for label-stack object extraction, deterministic centroid linking, track rendering, and migration metrics. Main-process dataframe tools require BioImageFlow, NumPy, pandas, and SciPy from the host; image-processing tools obtain ImageIO and scikit-image from their worker environment.
Tools
LabelsToObjects: converts 2D or TYX label images into source-keyed object centroid and area tables.NearestNeighborLink: links adjacent-frame objects with global one-to-one distance assignment, independently per source label stack when the source key is present.LapTrackLink: performs isolated LapTrack linking with gap closing and optional divisions, normalized to one-based track and lineage identifiers.TrackMetrics: computes explicit duration, path length, net displacement, speed, and area summaries.FilterObjects: filters object tables by area, frame, intensity, and position.TracksToLabels: renders track IDs back into label stacks.TrackTableValidate: validates required columns, frame order, and duplicate track frames.TrackQualityMetrics: computes gap counts, duplicate assignment conflicts, and short-track fraction.
LapTrackLink exposes native split events through lineage_id, nullable parent_track_id, and generation; merges are disabled so the normalized table retains one-parent lineage semantics.
The package intentionally does not expose Ultrack or btrack compatibility shims; btrack is the next candidate after this lineage contract has production use.
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Release files for bioimageflow-tracking-tools 0.3.2
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Source distribution (sdist)
| File | Size | Uploaded | |
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| bioimageflow_tracking_tools-0.3.2.tar.gz | 25.3 kB | Details |
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| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioimageflow_tracking_tools-0.3.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 45.0 kB
Release files / bioimageflow_tracking_tools-0.3.2.tar.gz
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Release files / bioimageflow_tracking_tools-0.3.2-py3-none-any.whl
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