Stars pypi

bionty: Registries for biological ontologies

  • Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
  • Create records from entries in public ontologies using .from_source().
  • Access full underlying public ontologies via .public() to search & bulk-create records.
  • Create in-house ontologies by extending public ontologies using hierarchical relationships among records (.parents).
  • Use .synonyms and .abbr to manage synonyms.
  • Safeguards against typos & duplications.
  • Manage multiple ontology versions via bionty.Source.

Read the docs.

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (2.5.2)

3 maintainers

PyPI data
Data sourced directly from PyPI's database.
Avatar for Koncopd from gravatar.com Koncopd Avatar for lamindev from gravatar.com lamindev Avatar for sunnyosun from gravatar.com sunnyosun

Credits

Author: Lamin Labs

Requires

Python >=3.10

Provides Extra

dev

Report project as malware

Metadata

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Newer release available (2.5.2)

3 maintainers

PyPI data
Data sourced directly from PyPI's database.
Avatar for Koncopd from gravatar.com Koncopd Avatar for lamindev from gravatar.com lamindev Avatar for sunnyosun from gravatar.com sunnyosun

Credits

Author: Lamin Labs

Requires

Python >=3.10

Provides Extra

dev

Report project as malware

Release files for bionty 2.5.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for bionty 2.5.0
File Size Uploaded
bionty-2.5.0.tar.gz 85.1 kB Details

Built distribution (wheel)

Table of built distributions (wheels) for bionty 2.5.0
File Interpreter ABI Platform
bionty-2.5.0-py3-none-any.whl 85.6 kB Python 3 none any Details

Total release size: 170.7 kB

Release files / bionty-2.5.0.tar.gz

Download URL bionty-2.5.0.tar.gz
Size 85.1 kB
Tags Source
SHA-256 checksum
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Release files / bionty-2.5.0-py3-none-any.whl

Download URL bionty-2.5.0-py3-none-any.whl
Size 85.6 kB
Tags Python 3
SHA-256 checksum
How to use checksums 		17bfb7bda7ebc0b427ea4512e79ed8c4c3a1952021054f44b002d1b7f7068305
BLAKE2b-256 checksum
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Uploaded via python-requests/2.34.2

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2.5.2

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