bioutils
Package Description
This project is a product of the biocommons community.
- Github repository: https://github.com/biocommons/bioutils/
- Documentation https://biocommons.github.io/bioutils/
Python Package Installation
Install from PyPI with pip install bioutils or uv pip install bioutils, then try it:
Developer Setup
Install Prerequisites
These tools are required to get started:
- git: Version control system
- GNU make: Current mechanism for consistent invocation of developer tools.
- uv: An extremely fast Python package and project manager, written in Rust.
MacOS or Linux Systems
- Install brew
brew install git make uv
Linux (Debian-based systems)
You may also install using distribution packages:
sudo apt install git make
Then install uv using the uv installation instructions.
One-time developer setup
Create a Python virtual environment, install dependencies, install pre-commit hooks, and install an editable package:
make devready
Development
N.B. Developers are strongly encouraged to use make to invoke tools to
ensure consistency with the CI/CD pipelines. Type make to see a list of
supported targets. A subset are listed here:
» make
🌟🌟 biocommons conventional make targets 🌟🌟
Using these targets promots consistency between local development and ci/cd commands.
usage: make [target ...]
BASIC USAGE
help Display help message
SETUP, INSTALLATION, PACKAGING
devready Prepare local dev env: Create virtual env, install the pre-commit hooks
build Build package
publish publish package to PyPI
FORMATTING, TESTING, AND CODE QUALITY
cqa Run code quality assessments
test Test the code with pytest
DOCUMENTATION
docs-serve Build and serve the documentation
docs-test Test if documentation can be built without warnings or errors
CLEANUP
clean Remove temporary and backup files
cleaner Remove files and directories that are easily rebuilt
cleanest Remove all files that can be rebuilt
distclean Remove untracked files and other detritus
3 maintainers
Metadata
3 maintainers
Release files for bioutils 0.6.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| bioutils-0.6.2.tar.gz | 585.3 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| bioutils-0.6.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 901.0 kB
Release files / bioutils-0.6.2.tar.gz
| Download URL | bioutils-0.6.2.tar.gz |
|---|---|
| Size | 585.3 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
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|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
uv/0.7.14
|
Release files / bioutils-0.6.2-py3-none-any.whl
| Download URL | bioutils-0.6.2-py3-none-any.whl |
|---|---|
| Size | 315.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
|
BLAKE2b-256 checksum How to use checksums |
b7667972d72ed5aec7c3e73837200287d7393180cff8822dcbb2a90ee1eb51da
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
uv/0.7.14
|
