janis-pipelines.bioinformatics 0.8.0

Bioinformatics tools for Janis; the Pipeline creation helper

Janis - Bioinformatics

This repository contains tools and data types for Janis directly related to the bioinformatics field.

Refer to the documentation.

Data types

The data types are a way of encapsulating information about the file (including secondary files), and it allows clarity when connecting inputs and steps together (as you know a BAM file should be connected to BAM input).

Documentation

Documentation is generated on Janis. To generate new documentation you will need to:

1. Commit your changes here,
2. Update the submodule pointer on Janis,
3. Checkout Janis (recursively),
4. Run the regenerate script janis/docs/regeneratedocumentation.py,
5. Commit these changes and the documentation will autobuild on ReadTheDocs.