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A few simple math function for other Oxford Nanopore processing scripts

Project description

# nanomath This module provides a few simple math and statistics functions for other scripts processing Oxford Nanopore sequencing data

[![Twitter URL](]( [![install with conda](]( [![install with Debian](]( [![Build Status](]( [![Code Health](](

## FUNCTIONS * Calculate read N50 from a set of lengths get_N50(readlenghts) * Remove extreme length outliers from a dataset remove_length_outliers(dataframe, columname) * Calculate the average Phred quality of a read ave_qual(qualscores) * Write out the statistics report after calling readstats function write_stats(dataframe, outputname) * Compute a number of statistics, return a dictionary calc_read_stats(dataframe)

## INSTALLATION `bash pip install nanomath ` or [![install with conda](]( ` conda install -c bioconda nanomath `

## STATUS [![Build Status](](

## CONTRIBUTORS [@alexomics]( for fixing the indentation of the printed stats

## CITATION If you use this tool, please consider citing our [publication](

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