Sphire ready to use in scipion.
Project description
=====================
Sphire scipion plugin
=====================
Plugin to use Sphire programs within the Scipion framework
So far we have implemented:
- crYOLO Version 1.2.2
=====
Setup
=====
- **Please follow installation instructions from**:
`Sphire webpage <http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1>`_ in order to install:
- crYOLO (last tested version: 1.2.2)
- crYOLO's boxmanager (last tested version: 1.1.0).
- **If you want to use the generic model**, please download also the General
PhosaursNet model and edit the ~/.config/scipion/scipion.conf file in such a way that exists the following
.. code-block::
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model
- **Install scipion-em-sphire as a Scipion plugin**
.. code-block::
scipion installp -p scipion-em-sphire
OR
- through the plugin manager GUI by launching Scipion and following **Configuration** >> **Plugins**
Alternatively, in devel mode:
.. code-block::
scipion installp -p local/path/to/scipion-em-sphire --devel
Sphire scipion plugin
=====================
Plugin to use Sphire programs within the Scipion framework
So far we have implemented:
- crYOLO Version 1.2.2
=====
Setup
=====
- **Please follow installation instructions from**:
`Sphire webpage <http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1>`_ in order to install:
- crYOLO (last tested version: 1.2.2)
- crYOLO's boxmanager (last tested version: 1.1.0).
- **If you want to use the generic model**, please download also the General
PhosaursNet model and edit the ~/.config/scipion/scipion.conf file in such a way that exists the following
.. code-block::
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model
- **Install scipion-em-sphire as a Scipion plugin**
.. code-block::
scipion installp -p scipion-em-sphire
OR
- through the plugin manager GUI by launching Scipion and following **Configuration** >> **Plugins**
Alternatively, in devel mode:
.. code-block::
scipion installp -p local/path/to/scipion-em-sphire --devel
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