Skip to main content

Sphire ready to use in scipion.

Project description

Sphire scipion plugin

Plugin to use Sphire programs within the Scipion framework

So far we have implemented:

  • crYOLO Version 1.2.2

Setup

  • Please follow installation instructions from: http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1 in order to install:
    • crYOLO (last tested version: 1.2.2)
    • crYOLO’s boxmanager (last tested version: 1.1.0).
  • If you want to use the generic model, please download also the General PhosaursNet model and edit the ~/.config/scipion/scipion.conf file in such a way that exists the following
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model
  • Install scipion-em-sphire as a Scipion plugin
scipion installp -p scipion-em-sphire

OR

  • through the plugin manager GUI by launching Scipion and following Configuration >> Plugins

Alternatively, in devel mode:

scipion installp -p local/path/to/scipion-em-sphire --devel

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Filename, size & hash SHA256 hash help File type Python version Upload date
scipion-em-sphire-1.2.6b1.tar.gz (32.5 kB) Copy SHA256 hash SHA256 Source None

Supported by

Elastic Elastic Search Pingdom Pingdom Monitoring Google Google BigQuery Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN SignalFx SignalFx Supporter DigiCert DigiCert EV certificate StatusPage StatusPage Status page