Sphire ready to use in scipion.
Project description
Sphire scipion plugin
Plugin to use Sphire programs within the Scipion framework
So far we have implemented:
crYOLO Version 1.2.2
Setup
- Please follow installation instructions from: http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1 in order to install:
crYOLO (last tested version: 1.2.2)
crYOLO’s boxmanager (last tested version: 1.1.0).
If you want to use the generic model, please download also the General PhosaursNet model and edit the ~/.config/scipion/scipion.conf file in such a way that exists the following
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_modelInstall scipion-em-sphire as a Scipion plugin
scipion installp -p scipion-em-sphireOR
through the plugin manager GUI by launching Scipion and following Configuration >> Plugins
Alternatively, in devel mode:
scipion installp -p local/path/to/scipion-em-sphire --develRelease history Release notifications | RSS feed
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scipion-em-sphire-1.2.6b1.tar.gz
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