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Sphire ready to use in scipion.

Project description

Sphire scipion plugin

Plugin to use Sphire programs within the Scipion framework

So far we have implemented:

  • crYOLO Version 1.2.2


  • Please follow installation instructions from: in order to install:
    • crYOLO (last tested version: 1.2.2)
    • crYOLO’s boxmanager (last tested version: 1.1.0).
  • If you want to use the generic model, please download also the General PhosaursNet model and edit the ~/.config/scipion/scipion.conf file in such a way that exists the following
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model
  • Install scipion-em-sphire as a Scipion plugin
scipion installp -p scipion-em-sphire


  • through the plugin manager GUI by launching Scipion and following Configuration >> Plugins

Alternatively, in devel mode:

scipion installp -p local/path/to/scipion-em-sphire --devel

Project details

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Files for scipion-em-sphire, version 1.2.6b1
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