scipion-em-sphire 1.2.6b1

Sphire ready to use in scipion.

Sphire scipion plugin

Plugin to use Sphire programs within the Scipion framework

So far we have implemented:

• crYOLO Version 1.2.2

Setup

• Please follow installation instructions from: http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1 in order to install:

  • crYOLO (last tested version: 1.2.2)

  • crYOLO’s boxmanager (last tested version: 1.1.0).

• If you want to use the generic model, please download also the General PhosaursNet model and edit the ~/.config/scipion/scipion.conf file in such a way that exists the following

CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model

• Install scipion-em-sphire as a Scipion plugin

scipion installp -p scipion-em-sphire

OR

• through the plugin manager GUI by launching Scipion and following Configuration >> Plugins

Alternatively, in devel mode:

scipion installp -p local/path/to/scipion-em-sphire --devel