Skip to main content

Sphire ready to use in scipion.

Project description

Sphire scipion plugin

Plugin to use Sphire programs within the Scipion framework

So far we have implemented:

  • crYOLO Version 1.2.2

Setup

  • Please follow installation instructions from: http://sphire.mpg.de/wiki/doku.php?id=downloads:cryolo_1&redirect=1 in order to install:
    • crYOLO (last tested version: 1.2.2)
    • crYOLO’s boxmanager (last tested version: 1.1.0).
  • If you want to use the generic model, please download also the General PhosaursNet model and edit the ~/.config/scipion/scipion.conf file in such a way that exists the following
CRYOLO_GEN_MODEL = path/to/the/downloaded/General_PhosaursNet_model
  • Install scipion-em-sphire as a Scipion plugin
scipion installp -p scipion-em-sphire

OR

  • through the plugin manager GUI by launching Scipion and following Configuration >> Plugins

Alternatively, in devel mode:

scipion installp -p local/path/to/scipion-em-sphire --devel

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for scipion-em-sphire, version 1.2.6b1
Filename, size File type Python version Upload date Hashes
Filename, size scipion-em-sphire-1.2.6b1.tar.gz (32.5 kB) File type Source Python version None Upload date Hashes View

Supported by

AWS AWS Cloud computing Datadog Datadog Monitoring DigiCert DigiCert EV certificate Facebook / Instagram Facebook / Instagram PSF Sponsor Fastly Fastly CDN Google Google Object Storage and Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Salesforce Salesforce PSF Sponsor Sentry Sentry Error logging StatusPage StatusPage Status page