Skip to main content

bioinformatics modules.

Project description

biomodules: 生物信息模块

通用模块

  1. MergeDir,给定一个输入文件夹和一个输出文件,把该文件夹下的所有文件合并到该文件中;

序列相关(seq)

  1. Fastq2Fasta,fastq转fasta;

预处理模块(preprocessing)

  1. Fastqc,使用fastqc进行质量控制;
  2. Filtlong,使用Filtlong过滤reads;

序列比对(align)

  1. blastn,使用blastn进行序列比对;
  2. minimap2,使用minimap2进行序列比对;
  3. samtools,使用samtools处理比对结果;

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

biomodules-1.1.2.tar.gz (5.8 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

biomodules-1.1.2-py2.py3-none-any.whl (6.6 kB view details)

Uploaded Python 2Python 3

File details

Details for the file biomodules-1.1.2.tar.gz.

File metadata

  • Download URL: biomodules-1.1.2.tar.gz
  • Upload date:
  • Size: 5.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.11.2

File hashes

Hashes for biomodules-1.1.2.tar.gz
Algorithm Hash digest
SHA256 50da78b05e9e98e1a8d98c07b6e30c7fab47fcfcd7ed9e9e45fdc3235ba2cfd1
MD5 5a724ea58bf35ad24ff4e0068368ec48
BLAKE2b-256 5e8ca6328b55f3f9e41e36794947cb636084d252b08e09ba7365cf546f5f67e6

See more details on using hashes here.

File details

Details for the file biomodules-1.1.2-py2.py3-none-any.whl.

File metadata

  • Download URL: biomodules-1.1.2-py2.py3-none-any.whl
  • Upload date:
  • Size: 6.6 kB
  • Tags: Python 2, Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/4.0.2 CPython/3.11.2

File hashes

Hashes for biomodules-1.1.2-py2.py3-none-any.whl
Algorithm Hash digest
SHA256 989cf70f37dfd9533c1b6771baf704216d90285da999d4486bae704245c1aee8
MD5 328ef8f8c1b26b921eae3f4db31a5e7e
BLAKE2b-256 56fcd54070f053a939587312fa2b6a2f329a5ad32f6d24b6e1f03b00459c749e

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page