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bioinformatics modules.

Project description

biomodules: 生物信息模块

通用模块

  1. MergeDir,给定一个输入文件夹和一个输出文件,把该文件夹下的所有文件合并到该文件中;

序列相关(seq)

  1. Fastq2Fasta,fastq转fasta;

预处理模块(preprocessing)

  1. Fastqc,使用fastqc进行质量控制;
  2. Filtlong,使用Filtlong过滤reads;

序列比对(align)

  1. blastn,使用blastn进行序列比对;
  2. minimap2,使用minimap2进行序列比对;
  3. samtools,使用samtools处理比对结果;

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