bioinformatics modules.
Project description
biomodules: 生物信息模块
通用模块
MergeDir,给定一个输入文件夹和一个输出文件,把该文件夹下的所有文件合并到该文件中;
序列相关(seq)
Fastq2Fasta,fastq转fasta;
预处理模块(preprocessing)
Fastqc,使用fastqc进行质量控制;Filtlong,使用Filtlong过滤reads;
序列比对(align)
blastn,使用blastn进行序列比对;minimap2,使用minimap2进行序列比对;samtools,使用samtools处理比对结果;
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