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vrsatile-pydantic
Translation of the GA4GH VRS and VRSATILE schemas to a Pydantic data model
The ga4gh/vrsatile/pydantic repo depends on VRS and VRSATILE models, and therefore each ga4gh.vrsatile.pydantic package on PyPI uses a particular version of VRS and VRSATILE. The correspondences between the packages may be summarized as:
- 0.0.X ~ 1.2.X: ga4gh.vrsatile.pydantic 0.0.X tracks VRS 1.2.X and the VRSATILE latest
- 0.1.X ~ metaschema-updates: ga4gh.vrsatile.pydantic 0.1.X tracks VRS and VRSATILE metaschema-updates
Developer instructions
To install vrstaile-pydantic:
pip install ga4gh.vrsatile.pydantic
Following are sections include instructions specifically for developers.
For a development install, we recommend using Pipenv. See the pipenv docs for direction on installing pipenv in your compute environment.
Once installed, from the project root dir, just run:
pipenv lock
pipenv sync
Init coding style tests
Code style is managed by flake8 and checked prior to commit.
We use pre-commit to run conformance tests.
This ensures:
- Check code style
- Check for added large files
- Detect AWS Credentials
- Detect Private Key
Before first commit run:
pre-commit install
Running unit tests
Running unit tests is as easy as pytest.
pipenv run pytest
3 maintainers
Metadata
3 maintainers
Release files for ga4gh.vrsatile.pydantic 0.1.0.dev7
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Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| ga4gh.vrsatile.pydantic-0.1.0.dev7.tar.gz | 12.0 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| ga4gh.vrsatile.pydantic-0.1.0.dev7-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 24.8 kB
Release files / ga4gh.vrsatile.pydantic-0.1.0.dev7.tar.gz
| Download URL | ga4gh.vrsatile.pydantic-0.1.0.dev7.tar.gz |
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| Size | 12.0 kB |
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Release files / ga4gh.vrsatile.pydantic-0.1.0.dev7-py3-none-any.whl
| Download URL | ga4gh.vrsatile.pydantic-0.1.0.dev7-py3-none-any.whl |
|---|---|
| Size | 12.7 kB |
| Tags | Python 3 |
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