sapphyre-tools
Bioinformatics tooling for sequence comparison, distance scoring, and reproducibility.
This project includes a collection of command-line tools and libraries focused on DNA and protein sequence analysis. Core features include scoring-matrix-based phylogenetic distance calculations and SIMD-accelerated Hamming distance utilities.
Installation
pip install sapphyre-tools
Features
- Scoring matrix support (e.g., BLOSUM62)
- SIMD-accelerated sequence comparison
- Tools for reproducible bioinformatics pipelines
- Built in Rust and Python
Status
Actively maintained and used in research pipelines. Packaging and documentation improvements are in progress.
License
Apache-2.0
2 maintainers
Release files for sapphyre-tools 0.11.17
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| sapphyre_tools-0.11.17-cp313-cp313-manylinux_2_28_x86_64.whl | CPython 3.13 | CPython 3.13 | Linux glibc 2.28+ x86-64 | Details |
| sapphyre_tools-0.11.17-cp312-cp312-manylinux_2_28_x86_64.whl | CPython 3.12 | CPython 3.12 | Linux glibc 2.28+ x86-64 | Details |
| sapphyre_tools-0.11.17-cp311-cp311-manylinux_2_28_x86_64.whl | CPython 3.11 | CPython 3.11 | Linux glibc 2.28+ x86-64 | Details |
| sapphyre_tools-0.11.17-cp310-cp310-manylinux_2_28_x86_64.whl | CPython 3.10 | CPython 3.10 | Linux glibc 2.28+ x86-64 | Details |
| sapphyre_tools-0.11.17-cp39-cp39-manylinux_2_28_x86_64.whl | CPython 3.9 | CPython 3.9 | Linux glibc 2.28+ x86-64 | Details |
| sapphyre_tools-0.11.17-cp38-cp38-manylinux_2_28_x86_64.whl | CPython 3.8 | CPython 3.8 | Linux glibc 2.28+ x86-64 | Details |
Total release size: 29.8 MB
Release files / sapphyre_tools-0.11.17-cp313-cp313-manylinux_2_28_x86_64.whl
| Download URL | sapphyre_tools-0.11.17-cp313-cp313-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 5.0 MB |
| Tags | CPython 3.13 Linux glibc 2.28+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.8.3
|
Release files / sapphyre_tools-0.11.17-cp312-cp312-manylinux_2_28_x86_64.whl
| Download URL | sapphyre_tools-0.11.17-cp312-cp312-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 5.0 MB |
| Tags | CPython 3.12 Linux glibc 2.28+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.8.3
|
Release files / sapphyre_tools-0.11.17-cp311-cp311-manylinux_2_28_x86_64.whl
| Download URL | sapphyre_tools-0.11.17-cp311-cp311-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 5.0 MB |
| Tags | CPython 3.11 Linux glibc 2.28+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.8.3
|
Release files / sapphyre_tools-0.11.17-cp310-cp310-manylinux_2_28_x86_64.whl
| Download URL | sapphyre_tools-0.11.17-cp310-cp310-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 5.0 MB |
| Tags | CPython 3.10 Linux glibc 2.28+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.8.3
|
Release files / sapphyre_tools-0.11.17-cp39-cp39-manylinux_2_28_x86_64.whl
| Download URL | sapphyre_tools-0.11.17-cp39-cp39-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 5.0 MB |
| Tags | CPython 3.9 Linux glibc 2.28+ x86-64 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.8.3
|
Release files / sapphyre_tools-0.11.17-cp38-cp38-manylinux_2_28_x86_64.whl
| Download URL | sapphyre_tools-0.11.17-cp38-cp38-manylinux_2_28_x86_64.whl |
|---|---|
| Size | 5.0 MB |
| Tags | CPython 3.8 Linux glibc 2.28+ x86-64 |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
maturin/1.8.3
|
