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A set of standalone application and pipelines dedicated to NGS (new generation sequencing) analysis

Project description

https://badge.fury.io/py/sequana.svg https://travis-ci.org/sequana/sequana.svg?branch=master https://coveralls.io/repos/github/sequana/sequana/badge.svg?branch=master Documentation Status
Python version:

3.5 (and 2.7 without snakemake)

Online documentation:

On readthedocs

Issues and bug reports:

On github

How to cite:

Desvillechabrol D, Bouchier C, Cokelaer T and Kennedy S. Sequana: a set of flexible genomic pipelines for processing and reporting NGS analysis [v1; no peer reviewed]. F1000Research 2016, 5:1767 (poster) (doi: 10.7490/f1000research.1112656.1)

Sequana includes a set of pipelines related to NGS (new generation sequencing) including quality control, variant calling, coverage, taxonomy…

Please see the documentation for an up-to-date status and documentation.

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