Package for reading, manipulating, and writing genomic data

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  • License: MIT License
  • Author: Andreas Heger
  • Requires: Python >=3.8
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Project description

pysam — a Python package for reading, manipulating, and writing genomic data sets.

pysam is a lightweight wrapper of the HTSlib API and provides facilities to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command-line functionality of samtools and bcftools. The module supports compression and random access through indexing.

This module provides a low-level wrapper around HTSlib’s C API using Cython and a high-level API for convenient access to the data within standard genomic file formats.

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  • License: MIT License
  • Author: Andreas Heger
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This version

0.24.0

0.23.3

0.23.2

0.23.1 yanked

Reason this release was yanked:

Pysam 0.23.1 broke binary compatibility for Cython projects.

0.23.0

0.22.1

0.22.0

0.21.0

0.20.0

0.19.1

0.19.0

0.18.0

0.17.0

0.16.0.1

0.16.0

0.15.4

0.15.3

0.15.2

0.15.1

0.15.0

0.14.1

0.14

0.13

0.12.0.1

0.12

0.11.2.2

0.11.2.1

0.11.2

0.11.1

0.11

0.10.0

0.9.1.4

0.9.1.3

0.9.1.2

0.9.1.1

0.9.1

0.9.0

0.8.4

0.8.3

0.8.2.1

0.8.2

0.8.1

0.8.0

0.7.8

0.7.7

0.7.6

0.7.5

0.7.4

0.7.3

0.7.2

0.7.1

0.7

0.6

0.4.1

0.4

0.3.1

0.3

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The following attestation bundles were made for pysam-0.24.0-cp38-cp38-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl:

Publisher: release.yaml on pysam-developers/pysam

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The following attestation bundles were made for pysam-0.24.0-cp38-cp38-manylinux_2_27_aarch64.manylinux_2_28_aarch64.whl:

Publisher: release.yaml on pysam-developers/pysam

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The following attestation bundles were made for pysam-0.24.0-cp38-cp38-manylinux2014_x86_64.manylinux_2_17_x86_64.whl:

Publisher: release.yaml on pysam-developers/pysam

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The following attestation bundles were made for pysam-0.24.0-cp38-cp38-macosx_10_9_x86_64.whl:

Publisher: release.yaml on pysam-developers/pysam

Attestations: Values shown here reflect the state when the release was signed and may no longer be current.

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