pysam — a Python package for reading, manipulating, and writing genomic data sets.

pysam is a lightweight wrapper of the HTSlib API and provides facilities to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command-line functionality of samtools and bcftools. The module supports compression and random access through indexing.

This module provides a low-level wrapper around HTSlib’s C API using Cython and a high-level API for convenient access to the data within standard genomic file formats.

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Author: Andreas Heger

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Python >=3.9

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Report project as malware

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Release history Release notifications | RSS feed

This release

0.24.1 This release

43 files

0.24.0

43 files

0.23.3

37 files

0.23.2

37 files

Yanked

0.23.1

37 files

Yanked reason: Pysam 0.23.1 broke binary compatibility for Cython projects.

0.23.0

31 files

0.22.1

27 files

0.22.0

27 files

0.21.0

21 files

0.20.0

21 files

0.19.1

21 files

0.19.0

21 files

0.18.0

16 files

0.17.0

13 files

0.16.0.1

7 files

0.16.0

7 files

0.15.4

18 files

0.15.3

1 file

0.15.2

7 files

0.15.1

7 files

0.15.0

6 files

0.14.1

6 files

0.14

6 files

0.13

6 files

0.12.0.1

6 files

0.12

6 files

0.11.2.2

6 files

0.11.2.1

6 files

0.11.2

1 file

0.11.1

6 files

0.11

6 files

0.10.0

6 files

0.9.1.4

1 file

0.9.1.3

1 file

0.9.1.2

1 file

0.9.1.1

1 file

0.9.1

1 file

0.9.0

1 file

0.8.4

1 file

0.8.3

1 file

0.8.2.1

1 file

0.8.2

1 file

0.8.1

1 file

0.8.0

1 file

0.7.8

1 file

0.7.7

1 file

0.7.6

1 file

0.7.5

0.7.4

0.7.3

0.7.2

0.7.1

0.7

0.6

0.4.1

1 file

0.4

1 file

0.3.1

0.3

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