pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
The current version wraps htslib-1.4.1, samtools-1.4.1 and bcftools-1.4.1.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Release files for pysam 0.11.2.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pysam-0.11.2.2.tar.gz | 2.5 MB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl | CPython 3.6 | CPython 3.6 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl | CPython 3.5 | CPython 3.5 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl | CPython 3.4 | CPython 3.4 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl | CPython 2.7 | CPython 2.7 pymalloc wide-unicode | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl | CPython 2.7 | CPython 2.7 pymalloc | Linux glibc 2.5+ x86-64 | Details |
Total release size: 43.3 MB
Release files / pysam-0.11.2.2.tar.gz
| Download URL | pysam-0.11.2.2.tar.gz |
|---|---|
| Size | 2.5 MB |
| Tags | Source |
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SHA-256 checksum How to use checksums |
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Release files / pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl
| Download URL | pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl |
|---|---|
| Size | 8.4 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.5+ x86-64 |
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SHA-256 checksum How to use checksums |
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Release files / pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl
| Download URL | pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl |
|---|---|
| Size | 8.3 MB |
| Tags | CPython 3.5 CPython 3.5 pymalloc Linux glibc 2.5+ x86-64 |
|
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Release files / pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl
| Download URL | pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl |
|---|---|
| Size | 8.5 MB |
| Tags | CPython 3.4 CPython 3.4 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
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Release files / pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl
| Download URL | pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl |
|---|---|
| Size | 7.8 MB |
| Tags | CPython 2.7 CPython 2.7 pymalloc wide-unicode Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl
| Download URL | pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl |
|---|---|
| Size | 7.8 MB |
| Tags | CPython 2.7 CPython 2.7 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
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