pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
The current version wraps htslib-1.7, samtools-1.7 and bcftools-1.6.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Release files for pysam 0.14
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| pysam-0.14.tar.gz | 3.0 MB | Without provenance | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl | CPython 3.6 | CPython 3.6 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl | CPython 3.5 | CPython 3.5 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl | CPython 3.4 | CPython 3.4 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl | CPython 2.7 | CPython 2.7 pymalloc wide-unicode | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl | CPython 2.7 | CPython 2.7 pymalloc | Linux glibc 2.5+ x86-64 | Details |
Total release size: 49.7 MB
Release files / pysam-0.14.tar.gz
| Download URL | pysam-0.14.tar.gz |
|---|---|
| Size | 3.0 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
c9c8ea82b4deee7607d5885fc7cc92311f06e765ff30e0b2b2d3d85b28cf5687
|
|
BLAKE2b-256 checksum How to use checksums |
d8788b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
Release files / pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl
| Download URL | pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.7 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
2aec5aebb90c1c1fe0f596984663773af7cc98ef1de0db047d93c99aac52177f
|
|
BLAKE2b-256 checksum How to use checksums |
967b845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
Release files / pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl
| Download URL | pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.5 MB |
| Tags | CPython 3.5 CPython 3.5 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
02cb2d210be93782179e94565ee7531a7e4ff2ddff05967ed9c502445a7544ed
|
|
BLAKE2b-256 checksum How to use checksums |
f7536e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
Release files / pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl
| Download URL | pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.7 MB |
| Tags | CPython 3.4 CPython 3.4 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
6da96be7861ca95a7c4378ac15c2e9372b45d99a3f5360d88e21a9d45fe6718c
|
|
BLAKE2b-256 checksum How to use checksums |
51c1474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
Release files / pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl
| Download URL | pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl |
|---|---|
| Size | 8.9 MB |
| Tags | CPython 2.7 CPython 2.7 pymalloc wide-unicode Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
f0973c10a3377d5d8291aeebd03ce9a79192581903407b475223428b0843e063
|
|
BLAKE2b-256 checksum How to use checksums |
2bffa7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
Release files / pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl
| Download URL | pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl |
|---|---|
| Size | 8.9 MB |
| Tags | CPython 2.7 CPython 2.7 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
f08e3ee089a1691be837473a40eea097be7de3c066ce3ebc1e2d486d0ebda29c
|
|
BLAKE2b-256 checksum How to use checksums |
c90bca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
Security for pysam 0.14
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
