pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
The current version wraps htslib-1.7, samtools-1.7 and bcftools-1.6.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Release files for pysam 0.15.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pysam-0.15.2.tar.gz | 3.2 MB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl | CPython 3.7 | CPython 3.7 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl | CPython 3.6 | CPython 3.6 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl | CPython 3.5 | CPython 3.5 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl | CPython 3.4 | CPython 3.4 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl | CPython 2.7 | CPython 2.7 pymalloc wide-unicode | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl | CPython 2.7 | CPython 2.7 pymalloc | Linux glibc 2.5+ x86-64 | Details |
Total release size: 59.2 MB
Release files / pysam-0.15.2.tar.gz
| Download URL | pysam-0.15.2.tar.gz |
|---|---|
| Size | 3.2 MB |
| Tags | Source |
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Release files / pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl
| Download URL | pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.5 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl
| Download URL | pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.6 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl
| Download URL | pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.5 MB |
| Tags | CPython 3.5 CPython 3.5 pymalloc Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl
| Download URL | pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl |
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| Size | 9.6 MB |
| Tags | CPython 3.4 CPython 3.4 pymalloc Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl
| Download URL | pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl |
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| Tags | CPython 2.7 CPython 2.7 pymalloc wide-unicode Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl
| Download URL | pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl |
|---|---|
| Size | 8.9 MB |
| Tags | CPython 2.7 CPython 2.7 pymalloc Linux glibc 2.5+ x86-64 |
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twine/1.12.1 pkginfo/1.4.2 requests/2.19.1 setuptools/27.2.0 requests-toolbelt/0.8.0 tqdm/4.28.1 CPython/3.6.0
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