pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Release files for pysam 0.16.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pysam-0.16.0.tar.gz | 3.4 MB | Details |
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl | CPython 3.8 | CPython 3.8 | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl | CPython 3.7 | CPython 3.7 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl | CPython 3.6 | CPython 3.6 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl | CPython 3.5 | CPython 3.5 pymalloc | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl | CPython 2.7 | CPython 2.7 pymalloc wide-unicode | Linux glibc 2.5+ x86-64 | Details |
| pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl | CPython 2.7 | CPython 2.7 pymalloc | Linux glibc 2.5+ x86-64 | Details |
Total release size: 61.5 MB
Release files / pysam-0.16.0.tar.gz
| Download URL | pysam-0.16.0.tar.gz |
|---|---|
| Size | 3.4 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
07c9d3a772f90e9907a68bc3f495e2c608018a92888b9cf9f1197cb3a35aa9c3
|
|
BLAKE2b-256 checksum How to use checksums |
187469018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
Python-urllib/3.8
|
Release files / pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl |
|---|---|
| Size | 10.2 MB |
| Tags | CPython 3.8 Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
e1aa22051efa4305ca045209bb184731f8f8e20afc833716ed91e89f1533ff53
|
|
BLAKE2b-256 checksum How to use checksums |
b6ad442c56d798a3e8c762f71af8c8c7f75c16599f6e51e1f6dd4df1688ad6d7
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/47.1.1.post20200529 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.3
|
Release files / pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.9 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
9c532f33b5379744941d8fcdf00e6d75aef48319372789836ff1c3f717b84563
|
|
BLAKE2b-256 checksum How to use checksums |
f921dc7ec647d83a21a3b805a20f0039f466d5cfd4acc40f411aaf78da83ebb4
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/47.1.1.post20200529 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.3
|
Release files / pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.9 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
f4e31ffd685d333431ac7e7dd74f83f4e14eff1905a4ef1188b2b03da8854f01
|
|
BLAKE2b-256 checksum How to use checksums |
879244f62c9b75b8f01f4671e7d4ac0951d3379126c7e2d280ebdcba3d7cb0df
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/47.1.1.post20200529 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.3
|
Release files / pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.8 MB |
| Tags | CPython 3.5 CPython 3.5 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
d01e72eafea1867c714f0754339b3c549c44dc535e5c497601789ba1dc1f3fca
|
|
BLAKE2b-256 checksum How to use checksums |
9c24537e86533e773c3dcb6bd05de60bf118cf8ccf60dcf24386a5c3807120bd
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/47.1.1.post20200529 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.3
|
Release files / pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl |
|---|---|
| Size | 9.2 MB |
| Tags | CPython 2.7 CPython 2.7 pymalloc wide-unicode Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
1cb17ff9562a5b075a609f070ab4b3290e8a8021eaf2016f4248ee4202e47957
|
|
BLAKE2b-256 checksum How to use checksums |
1dc649045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/47.1.1.post20200529 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.3
|
Release files / pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.2 MB |
| Tags | CPython 2.7 CPython 2.7 pymalloc Linux glibc 2.5+ x86-64 |
|
SHA-256 checksum How to use checksums |
688ac7f4d7f134a8c7193963c7cccbb3f3f630c51909bb76d809b4db35aaf8f0
|
|
BLAKE2b-256 checksum How to use checksums |
f7556f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/3.1.1 pkginfo/1.5.0.1 requests/2.23.0 setuptools/47.1.1.post20200529 requests-toolbelt/0.9.1 tqdm/4.46.1 CPython/3.8.3
|
