pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Release files for pysam 0.16.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | Actions |
|---|---|---|---|---|
| pysam-0.16.0.tar.gz | 3.4 MB | Without provenance | Details for pysam-0.16.0.tar.gz |
Built distributions (wheels)
Total release size: 61.5 MB
Release files / pysam-0.16.0.tar.gz
| Download URL | pysam-0.16.0.tar.gz |
|---|---|
| Size | 3.4 MB |
| Tags | Source |
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Release files / pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl |
|---|---|
| Size | 10.2 MB |
| Tags | CPython 3.8 Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl |
|---|---|
| Size | 9.9 MB |
| Tags | CPython 3.7 CPython 3.7 pymalloc Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl |
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| Size | 9.9 MB |
| Tags | CPython 3.6 CPython 3.6 pymalloc Linux glibc 2.5+ x86-64 |
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Release files / pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl |
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| Size | 9.8 MB |
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Release files / pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl |
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| Size | 9.2 MB |
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Release files / pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl
| Download URL | pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl |
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| Size | 9.2 MB |
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