pysam - a python module for reading, manipulating and writing genomic data sets.
pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data within standard genomic file formats.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Release files for pysam 0.18.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| pysam-0.18.0.tar.gz | 3.8 MB | Details |
Built distributions (wheels)
Total release size: 171.4 MB
Release files / pysam-0.18.0.tar.gz
| Download URL | pysam-0.18.0.tar.gz |
|---|---|
| Size | 3.8 MB |
| Tags | Source |
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Release files / pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
| Download URL | pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl |
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| Tags | CPython 3.10 Linux glibc 2.12+ x86-64 |
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Release files / pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl
| Download URL | pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl |
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Release files / pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl
| Download URL | pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl |
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Release files / pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
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Release files / pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl
| Download URL | pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl |
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Release files / pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl
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Release files / pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
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Release files / pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl
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Release files / pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl
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Release files / pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
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Release files / pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl
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Release files / pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl
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Release files / pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl
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Release files / pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl
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Release files / pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl
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