The SAM/BAM/CRAM format is a way to store efficiently large numbers of alignments, such as those routinely are created by next-generation sequencing methods.
This module provides a low-level wrapper around the htslib C-API as using cython and a high-level API for convenient access to the data in SAM/BAM formatted files. Also included is an interface to the samtools command line utilities and the tabix C-API for reading compressed and indexed tabular data.
The current version wraps htslib-1.2.1 and samtools-1.2.
See: http://www.htslib.org https://github.com/pysam-developers/pysam http://pysam.readthedocs.org/en/stable
Release files for pysam 0.8.4
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| pysam-0.8.4.tar.gz | 1.7 MB | Without provenance | Details |
Release files / pysam-0.8.4.tar.gz
| Download URL | pysam-0.8.4.tar.gz |
|---|---|
| Size | 1.7 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
30cf23931edf8a426678811f234bca4a83a53438028b323f2ef55792562d9dea
|
|
BLAKE2b-256 checksum How to use checksums |
2789bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
Security for pysam 0.8.4
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
