Skip to main content

gsetl

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-0.0.24.tar.gz (25.0 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-0.0.24-py3-none-any.whl (45.4 kB view details)

Uploaded Python 3

File details

Details for the file gseda-0.0.24.tar.gz.

File metadata

  • Download URL: gseda-0.0.24.tar.gz
  • Upload date:
  • Size: 25.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.0.1 CPython/3.8.19

File hashes

Hashes for gseda-0.0.24.tar.gz
Algorithm Hash digest
SHA256 ae3e26e33e5b7879de12c7578343647011dddba3e66034d1e90416574e636ca0
MD5 84b9e047dd808c98ab9836feb4807a59
BLAKE2b-256 d7c90765863a292f9ae389795a2fe6f0ff3eb6354ef18cb075c540f60ca43ec0

See more details on using hashes here.

File details

Details for the file gseda-0.0.24-py3-none-any.whl.

File metadata

  • Download URL: gseda-0.0.24-py3-none-any.whl
  • Upload date:
  • Size: 45.4 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.0.1 CPython/3.8.19

File hashes

Hashes for gseda-0.0.24-py3-none-any.whl
Algorithm Hash digest
SHA256 b8a152bd850aff36c0c14dbb327630836b3179448e6d1fb612bca23a38c85fa6
MD5 5a642a5d80ebae2359d71ad2235be248
BLAKE2b-256 8db9c9dd3b1278055a5b4989a3648f2b63c2f0ad971b550b62506244bebef539

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page