Skip to main content

gsetl

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.6.1.tar.gz (40.1 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.6.1-py3-none-any.whl (68.7 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.6.1.tar.gz.

File metadata

  • Download URL: gseda-1.6.1.tar.gz
  • Upload date:
  • Size: 40.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.0.1 CPython/3.8.19

File hashes

Hashes for gseda-1.6.1.tar.gz
Algorithm Hash digest
SHA256 cf84e3c7a08ee6bb2e54ef854119ab76eb268591d554554215669db6912f6b9b
MD5 e4f7bc9964e9e0d010d1c15df8a7615a
BLAKE2b-256 2feeaafebefed1a427a54049f44b2a32cb36df02bec30bbabb995f63d027a2dc

See more details on using hashes here.

File details

Details for the file gseda-1.6.1-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.6.1-py3-none-any.whl
  • Upload date:
  • Size: 68.7 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.0.1 CPython/3.8.19

File hashes

Hashes for gseda-1.6.1-py3-none-any.whl
Algorithm Hash digest
SHA256 369bc700e19436baa0dda30658d6460ab217ce53228760105a3f5750a79d763e
MD5 b609e81f85dbd499fd4caffdf1df1354
BLAKE2b-256 5319ab44da89a34b09d246c66ecdc1d48d62092f947bc56c40b6de973b756715

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page