gsetl

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for keithyin from gravatar.com keithyin

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers
Report project as malware

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for keithyin from gravatar.com keithyin

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers

Release history Release notifications | RSS feed

1.21.9

1.21.8

1.21.7

1.21.6

1.21.5

1.21.4

1.21.2

1.21.1

1.21.0

1.20.0

1.19.3

1.19.2

1.19.1

1.19.0

1.18.0

1.17.0

1.16.4

1.16.3

1.16.2

1.16.1

1.16.0

1.15.5

1.15.4

1.15.3

1.15.2

This version

1.15.1

1.15.0

1.14.1

1.14.0

1.13.2

1.13.1

1.13.0

1.12.0

1.11.0

1.10.2

1.10.1

1.10.0

1.9.0

1.8.0

1.7.4

1.7.3

1.7.2

1.7.1

1.7.0

1.6.1

1.6.0

1.5.0

1.4.2

1.4.1

1.4.0

1.3.0

1.2.1

1.2.0

1.1.0

1.0.0

0.5.0

0.4.4

0.4.2

0.4.1

0.4.0

0.3.2

0.3.1

0.3.0

0.1.0

0.0.32

0.0.28

0.0.27

0.0.26

0.0.25

0.0.24

0.0.23

0.0.22

0.0.20

0.0.19

0.0.18

0.0.17

0.0.16

0.0.15

0.0.14

0.0.13

0.0.11

0.0.10

0.0.9

0.0.8

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3

0.0.2

0.0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.15.1.tar.gz (53.2 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.15.1-py3-none-any.whl (100.6 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.15.1.tar.gz.

File metadata

  • Download URL: gseda-1.15.1.tar.gz
  • Upload date:
  • Size: 53.2 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.15.1.tar.gz
Algorithm Hash digest
SHA256 8d3789f5a3659ea56d156eab26f5da212d05dfe5c7efd115de549dcf36839cce
MD5 37b424b83fd6a1046c5ca09f746fbd2d
BLAKE2b-256 19981e3da18b18aec26088d37211a43e2051cfe74ff7274996575e2a41b31b29

See more details on using hashes here.

File details

Details for the file gseda-1.15.1-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.15.1-py3-none-any.whl
  • Upload date:
  • Size: 100.6 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.15.1-py3-none-any.whl
Algorithm Hash digest
SHA256 d98ef09d9368a36e044cb6cac10460464b3e749027e828d8c11bf4ff6176530e
MD5 f34abd1d736646fef533613f7490c89c
BLAKE2b-256 6b98bed58a74f79a9342a5991fe7536ef9e1e09e70253df3b8b737dcb26502a5

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page