Skip to main content

gsetl

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.16.1.tar.gz (123.3 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.16.1-py3-none-any.whl (178.8 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.16.1.tar.gz.

File metadata

  • Download URL: gseda-1.16.1.tar.gz
  • Upload date:
  • Size: 123.3 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.16.1.tar.gz
Algorithm Hash digest
SHA256 a8c34e056979fc9f3eb25138ca94e57c76c58b838a079b4011bbbe2d026f469e
MD5 0af4fb4d5f6da2abc452c74504a7c4e5
BLAKE2b-256 ac4efa8da888ab8ef8c73bba84e01f470555d743c6d104c4e78faa89b6b847b6

See more details on using hashes here.

File details

Details for the file gseda-1.16.1-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.16.1-py3-none-any.whl
  • Upload date:
  • Size: 178.8 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.16.1-py3-none-any.whl
Algorithm Hash digest
SHA256 0f5a43ef5b8c1b844826fa790671c749ae73bd745985a2d367d6dbd0557bc29f
MD5 8f30fbc3f1fd7a5b4367333b3d52b683
BLAKE2b-256 99c72f162c97d18f3dea259ed36dc422938b74c4b3f62b881c22efd35d4d34a6

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page