gsetl

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for keithyin from gravatar.com keithyin

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers
Report project as malware

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for keithyin from gravatar.com keithyin

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers

Release history Release notifications | RSS feed

1.21.9

1.21.8

1.21.7

1.21.6

1.21.5

1.21.4

1.21.2

1.21.1

1.21.0

1.20.0

1.19.3

1.19.2

1.19.1

1.19.0

1.18.0

1.17.0

1.16.4

1.16.3

1.16.2

1.16.1

1.16.0

This version

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.1

1.14.0

1.13.2

1.13.1

1.13.0

1.12.0

1.11.0

1.10.2

1.10.1

1.10.0

1.9.0

1.8.0

1.7.4

1.7.3

1.7.2

1.7.1

1.7.0

1.6.1

1.6.0

1.5.0

1.4.2

1.4.1

1.4.0

1.3.0

1.2.1

1.2.0

1.1.0

1.0.0

0.5.0

0.4.4

0.4.2

0.4.1

0.4.0

0.3.2

0.3.1

0.3.0

0.1.0

0.0.32

0.0.28

0.0.27

0.0.26

0.0.25

0.0.24

0.0.23

0.0.22

0.0.20

0.0.19

0.0.18

0.0.17

0.0.16

0.0.15

0.0.14

0.0.13

0.0.11

0.0.10

0.0.9

0.0.8

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3

0.0.2

0.0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.15.5.tar.gz (120.1 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.15.5-py3-none-any.whl (170.5 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.15.5.tar.gz.

File metadata

  • Download URL: gseda-1.15.5.tar.gz
  • Upload date:
  • Size: 120.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.15.5.tar.gz
Algorithm Hash digest
SHA256 51c5d7c11106d8eac54ff9fbb789b24953432db765797ffbe58cdc60cdc2e512
MD5 6acc15f91abd3be06952d3518165207f
BLAKE2b-256 61f1118cdb508b71caf64db95d691eebf621b7992bc2a3aa6b5414ee0eb575f2

See more details on using hashes here.

File details

Details for the file gseda-1.15.5-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.15.5-py3-none-any.whl
  • Upload date:
  • Size: 170.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.15.5-py3-none-any.whl
Algorithm Hash digest
SHA256 f29b2d48cc69cea6d4bf0ea8670ea39764f8ebfcc5d2827de541785265c7a149
MD5 b326a7baf365994459fcd715cc6baddb
BLAKE2b-256 84198e1d9ea8a4438fe43fd5d06d3a4c8acb7e9fc1a18e92ac583c8d1f2c9cd9

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page