gsetl

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for keithyin from gravatar.com keithyin

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers
Report project as malware

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for keithyin from gravatar.com keithyin

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers

Release history Release notifications | RSS feed

1.21.9

1.21.8

1.21.7

1.21.6

1.21.5

1.21.4

1.21.2

1.21.1

1.21.0

1.20.0

1.19.3

1.19.2

1.19.1

1.19.0

1.18.0

1.17.0

1.16.4

1.16.3

1.16.2

1.16.1

1.16.0

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.1

1.14.0

1.13.2

1.13.1

1.13.0

1.12.0

1.11.0

1.10.2

1.10.1

1.10.0

1.9.0

1.8.0

1.7.4

1.7.3

1.7.2

1.7.1

1.7.0

1.6.1

1.6.0

1.5.0

This version

1.4.2

1.4.1

1.4.0

1.3.0

1.2.1

1.2.0

1.1.0

1.0.0

0.5.0

0.4.4

0.4.2

0.4.1

0.4.0

0.3.2

0.3.1

0.3.0

0.1.0

0.0.32

0.0.28

0.0.27

0.0.26

0.0.25

0.0.24

0.0.23

0.0.22

0.0.20

0.0.19

0.0.18

0.0.17

0.0.16

0.0.15

0.0.14

0.0.13

0.0.11

0.0.10

0.0.9

0.0.8

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3

0.0.2

0.0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.4.2.tar.gz (38.4 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.4.2-py3-none-any.whl (66.0 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.4.2.tar.gz.

File metadata

  • Download URL: gseda-1.4.2.tar.gz
  • Upload date:
  • Size: 38.4 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.0.1 CPython/3.8.19

File hashes

Hashes for gseda-1.4.2.tar.gz
Algorithm Hash digest
SHA256 2547fdcec0269877647f1390de1edf87fb6bcb7c7942d26556f69d7fa429f1ad
MD5 726c71253ece3655cd07e5da85677b34
BLAKE2b-256 46f551789d3428f34c9d5fb992071a0b1e5d925d425a2a4eca945ebc6eee46c9

See more details on using hashes here.

File details

Details for the file gseda-1.4.2-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.4.2-py3-none-any.whl
  • Upload date:
  • Size: 66.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.0.1 CPython/3.8.19

File hashes

Hashes for gseda-1.4.2-py3-none-any.whl
Algorithm Hash digest
SHA256 89ea728382fe9eff40b01fa49d98b1a141e04774918120be0b8f9d70b0fe2505
MD5 8f3a10d45aedd5dd2cc4b2064a6ca57b
BLAKE2b-256 916becd36918faaed9c2a0fdb9d2bc5bb0e3e1c36fdcd76d03bdc7eb500607c5

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page