gsetl

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  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
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Report project as malware

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details

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Avatar for keithyin from gravatar.com keithyin

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  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers

Release history Release notifications | RSS feed

1.21.9

1.21.8

1.21.7

1.21.6

1.21.5

1.21.4

1.21.2

1.21.1

1.21.0

1.20.0

1.19.3

1.19.2

1.19.1

1.19.0

1.18.0

1.17.0

1.16.4

1.16.3

1.16.2

1.16.1

1.16.0

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.1

1.14.0

1.13.2

1.13.1

1.13.0

1.12.0

1.11.0

1.10.2

1.10.1

1.10.0

1.9.0

1.8.0

1.7.4

1.7.3

1.7.2

1.7.1

1.7.0

1.6.1

1.6.0

1.5.0

1.4.2

1.4.1

1.4.0

1.3.0

1.2.1

1.2.0

1.1.0

1.0.0

0.5.0

0.4.4

0.4.2

0.4.1

0.4.0

0.3.2

0.3.1

0.3.0

0.1.0

0.0.32

0.0.28

0.0.27

0.0.26

This version

0.0.25

0.0.24

0.0.23

0.0.22

0.0.20

0.0.19

0.0.18

0.0.17

0.0.16

0.0.15

0.0.14

0.0.13

0.0.11

0.0.10

0.0.9

0.0.8

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3

0.0.2

0.0.1

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