Skip to main content

gsetl

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.0.0.tar.gz (35.1 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.0.0-py3-none-any.whl (60.5 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.0.0.tar.gz.

File metadata

  • Download URL: gseda-1.0.0.tar.gz
  • Upload date:
  • Size: 35.1 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.0.1 CPython/3.8.19

File hashes

Hashes for gseda-1.0.0.tar.gz
Algorithm Hash digest
SHA256 6e211ae4ebcb00c5247eacb20d6ff4cbf52f9b32b7de55ceade5fc184f672395
MD5 8797e08e03dc4fd3785cc478e9dbf33e
BLAKE2b-256 543b1d1da1cb0c560a7e6173c584a816444d019749880beea4a272222f4935e6

See more details on using hashes here.

File details

Details for the file gseda-1.0.0-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.0.0-py3-none-any.whl
  • Upload date:
  • Size: 60.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.0.1 CPython/3.8.19

File hashes

Hashes for gseda-1.0.0-py3-none-any.whl
Algorithm Hash digest
SHA256 1e66b857880bfa2462918783db560aa38c497c6d47f7ebfe3b2c8b1c060f1d15
MD5 809bfa3e5a5ecd80a303de6df5abc0d2
BLAKE2b-256 5a76b34232298f6f3e10757e4da3011c443ec88235fd9e47ea43fd6be16f3017

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page