Skip to main content

gsetl

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.20.0.tar.gz (150.6 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.20.0-py3-none-any.whl (216.9 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.20.0.tar.gz.

File metadata

  • Download URL: gseda-1.20.0.tar.gz
  • Upload date:
  • Size: 150.6 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.20.0.tar.gz
Algorithm Hash digest
SHA256 87f55a4a4441c78b8196544f0254d73849f705abf0b457da1a10832a461e9a4a
MD5 a3fcddad02f8812ac6d4a249249b9a78
BLAKE2b-256 136eb42beec37ba71cdb70204cbcc9596b34faccd0415fb337239887243508b9

See more details on using hashes here.

File details

Details for the file gseda-1.20.0-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.20.0-py3-none-any.whl
  • Upload date:
  • Size: 216.9 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.20.0-py3-none-any.whl
Algorithm Hash digest
SHA256 bf8280e624de23e539a0649fb2754822d10e0e98bdc47954925921d8962a8df5
MD5 bd892179a9642e142c1308f4e49cd00d
BLAKE2b-256 35273dfefa446a67e397ad68247c28bb9f60d38739c5c6f9ffe81f09af01efb0

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page