gsetl

Navigation

Verified details

These details have been verified by PyPI
Maintainers
Avatar for keithyin from gravatar.com keithyin

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers
Report project as malware

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for keithyin from gravatar.com keithyin

Unverified details

These details have not been verified by PyPI
Project links
Meta
  • License: MIT License
  • Author: keithyin
  • Requires: Python >=3.8
Classifiers

Release history Release notifications | RSS feed

1.21.9

1.21.8

1.21.7

1.21.6

1.21.5

1.21.4

1.21.2

1.21.1

1.21.0

1.20.0

1.19.3

1.19.2

1.19.1

1.19.0

1.18.0

1.17.0

1.16.4

1.16.3

1.16.2

1.16.1

1.16.0

1.15.5

1.15.4

1.15.3

1.15.2

1.15.1

1.15.0

1.14.1

1.14.0

1.13.2

1.13.1

1.13.0

1.12.0

1.11.0

1.10.2

1.10.1

This version

1.10.0

1.9.0

1.8.0

1.7.4

1.7.3

1.7.2

1.7.1

1.7.0

1.6.1

1.6.0

1.5.0

1.4.2

1.4.1

1.4.0

1.3.0

1.2.1

1.2.0

1.1.0

1.0.0

0.5.0

0.4.4

0.4.2

0.4.1

0.4.0

0.3.2

0.3.1

0.3.0

0.1.0

0.0.32

0.0.28

0.0.27

0.0.26

0.0.25

0.0.24

0.0.23

0.0.22

0.0.20

0.0.19

0.0.18

0.0.17

0.0.16

0.0.15

0.0.14

0.0.13

0.0.11

0.0.10

0.0.9

0.0.8

0.0.7

0.0.6

0.0.5

0.0.4

0.0.3

0.0.2

0.0.1

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.10.0.tar.gz (45.5 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.10.0-py3-none-any.whl (80.5 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.10.0.tar.gz.

File metadata

  • Download URL: gseda-1.10.0.tar.gz
  • Upload date:
  • Size: 45.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.10.0.tar.gz
Algorithm Hash digest
SHA256 69afc102580bcd4a74e48a652bbeee5f9741ba4100dd4320fd7f837bc1c1fa17
MD5 741367a18d8511c0a2eb953a380df397
BLAKE2b-256 82f6a8724e8114407fb9d1d57a5f06f32144ec39f3f6417aedd5901a0fc2521b

See more details on using hashes here.

File details

Details for the file gseda-1.10.0-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.10.0-py3-none-any.whl
  • Upload date:
  • Size: 80.5 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.10.0-py3-none-any.whl
Algorithm Hash digest
SHA256 2286100a411f6b212a851a157dfb479d3b565643230a549d9422cebd8bb6d183
MD5 45204c40a0e77aa5a41650623b97ee39
BLAKE2b-256 c07a6494c31ca30635a38d9bcc4b863bb41705edd4bb200a781961d6cc2057b7

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page