Skip to main content

gsetl

Project description

gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project details


Release history Release notifications | RSS feed

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gseda-1.21.5.tar.gz (151.5 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gseda-1.21.5-py3-none-any.whl (217.7 kB view details)

Uploaded Python 3

File details

Details for the file gseda-1.21.5.tar.gz.

File metadata

  • Download URL: gseda-1.21.5.tar.gz
  • Upload date:
  • Size: 151.5 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.21.5.tar.gz
Algorithm Hash digest
SHA256 d0285b43e92814c9825d078b5622601fd343afa3f3d917818365ca28d1e709d7
MD5 9752c06c6c50552bec81336d12fee1bc
BLAKE2b-256 ab04d98696a7cc52071af232dbf5860ec9e7cb7a187df68e01841c4e95d8da9e

See more details on using hashes here.

File details

Details for the file gseda-1.21.5-py3-none-any.whl.

File metadata

  • Download URL: gseda-1.21.5-py3-none-any.whl
  • Upload date:
  • Size: 217.7 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/6.1.0 CPython/3.8.20

File hashes

Hashes for gseda-1.21.5-py3-none-any.whl
Algorithm Hash digest
SHA256 67aa47eb2e1a46a4844963669fb3d4d93e8a097d1c179832cf7e153d5600bc9a
MD5 d20ec5920eaba033dd5c411fdb16e678
BLAKE2b-256 ca85f441ae02ae9a04faed9cd25cc09223d7ef00e9746b4f31d3c11fdc60872e

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page