gseda how to pack: https://cloud.tencent.com/developer/article/2401343

bam_filter

  • drop_multiple_mapping_reads: drop multiple mapping reads from aligned bam

bam_surgery

  • insert_cs_to_sbr_bam: insert consensus reads to subreads.bam
  • insert_ref_to_sbr_bam: insert aligned ref seqeunce region to sbreads.bam

fact_table_nan

  • used to analysis the fact tables that gsetl generated

msa_view

  • show pileup msa alignment result

ChangeLog

0.0.26

    • phreq-ana-cli

0.0.25

    • longIndel analysis

0.0.23

    • mm2 version check

0.0.21

    • bam-basic-stat-cli
    • msa-view-cli

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for keithyin from gravatar.com keithyin

Credits

Author: keithyin

License

MIT License

Requires

Python >=3.8

Classifiers

Report project as malware

Metadata

Project links

Key dates

PyPI data
Data sourced directly from PyPI's database.
  • Released:
Latest release

1 maintainer

PyPI data
Data sourced directly from PyPI's database.
Avatar for keithyin from gravatar.com keithyin

Credits

Author: keithyin

License

MIT License

Requires

Python >=3.8

Classifiers

Report project as malware

Release files for gseda 1.23.0

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Source distribution (sdist)

Source distribution for gseda 1.23.0
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Table of built distributions (wheels) for gseda 1.23.0
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gseda-1.23.0-py3-none-any.whl 306.3 kB Python 3 none any Details

Total release size: 537.9 kB

Release files / gseda-1.23.0.tar.gz

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Release files / gseda-1.23.0-py3-none-any.whl

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Size 306.3 kB
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